GEO help: Mouse over screen elements for information.
Status
Public on Apr 18, 2011
Title
Conway Institute Candida parapsilosis 5834 v1.1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Candida parapsilosis Manufacturer
Agilent
Manufacture protocol
Oligonucleotides were designed from an in-house annotation of the C.parapsilosis genome sequence (http://www.sanger.ac.uk/sequencing/Candida/parapsilosis/ ) using eArray from Agilent Technology. Each of 5834 open reading frames is represented by two oligonucleotides probes. Mitochondrial genes are indicated by the prefix cpmt. Controls from Arabidopsis thaliana were included. The probes were used to generate custom microarrays in a 4x44 K format with a randomized layout.
Description
The Cpag_IDs can be downloaded as a .zip file from the Broad institute page at the following link:http://www.broadinstitute.org/annotation/genome/lodderomyces_elongisporus/MultiDownloads.html
Contributor(s)
Butler G Submission date
Feb 18, 2011
Last update date
Apr 18, 2011
Contact name
Geraldine Butler
E-mail(s)
geraldine.butler@ucd.ie Organization name
University Colege Dublin Conway Institute
Department
School of Biomolecular and Biomedical Science
Lab
Butler lab
Street address
Belfield
City
Dublin
ZIP/Postal code
D4
Country
Ireland
Samples (33)
GSM677705 , GSM677706 , GSM677707 , GSM677708 , GSM677715 , GSM677716
GSM677717 ,
GSM677718 ,
GSM677719 ,
GSM677720 ,
GSM677721 ,
GSM812942 ,
GSM812943 ,
GSM812944 ,
GSM812945 ,
GSM812946 ,
GSM812947 ,
GSM812948 ,
GSM812949 ,
GSM827646 ,
GSM827647 ,
GSM827648 ,
GSM827649 ,
GSM827650 ,
GSM827651 ,
GSM827652 ,
GSM827653 ,
GSM827654 ,
GSM827655 ,
GSM827656 ,
GSM827657 ,
GSM827658 ,
GSM827659 Series (10)
GSE27405 Transcriptional response of an azole-resistant Candida parapsilosis isolate [fluconazole].
GSE27407 Transcriptional response of an azole-resistant Candida parapsilosis isolate [posaconazole].
GSE27408 Transcriptional response of an azole-resistant Candida parapsilosis isolate [voriconazole].
GSE27409 Transcriptional response of an azole-resistant Candida parapsilosis isolate.
GSE32712 Transcriptional profile of Candida parapsilosis CLIB214 21% Oxygen (normoxia) versus at 1% oxygen (hypoxia).
GSE32713 Transcriptional profile of Candida parapsilosis CLIB214 versus UPC2 delete, both at 1% oxygen (hypoxia)
GSE32716 Transcriptional landscape of the pathogenic yeast Candida parapsilosis
GSE33461 Transcriptional profile of Candida parapsilosis bcr1 knockout.
GSE33462 Transcriptional profile of Candida parapsilosis CLIB214 culture in low iron conditions
GSE33490 Conserved and divergent roles of Bcr1 and CFEM proteins in Candida parapsilosis and Candida albicans
Data table header descriptions ID Block Agilent block number
Row Row
Column Column
SPOT_ID Probe_ID Probe name
Cpar_ID Gene ID from in-house annotation (cpar)
Cpag_ID Gene ID from annotation by Broad Institute (http://www.broad.mit.edu/annotation/fgi/). If a CPAG annotation is not available, the cpar annotation is given.
ORF_BROAD_INSTITUTE Locus tag assigned by the Broad Institute
SEQUENCE probe sequence information
Data table ID Block Row Column SPOT_ID Probe_ID Cpar_ID Cpag_ID ORF_BROAD_INSTITUTE SEQUENCE 1
1
1
1
GE_BrightCorner
null
null
null
2
1
1
2
GE_BrightCorner
null
null
null
3
1
1
3
DarkCorner
null
null
null
4
1
1
4
DarkCorner
null
null
null
5
1
1
5
DarkCorner
null
null
null
6
1
1
6
DarkCorner
null
null
null
7
1
1
7
DarkCorner
null
null
null
8
1
1
8
DarkCorner
null
null
null
9
1
1
9
DarkCorner
null
null
null
10
1
1
10
DarkCorner
null
null
null
11
1
1
11
DarkCorner
null
null
null
12
1
1
12
DarkCorner
null
null
null
13
1
1
13
DarkCorner
null
null
null
14
1
1
14
DarkCorner
null
null
null
15
1
1
15
DarkCorner
null
null
null
16
1
1
16
DarkCorner
null
null
null
17
1
1
17
DarkCorner
null
null
null
18
1
1
18
DarkCorner
null
null
null
19
1
1
19
DarkCorner
null
null
null
20
1
1
20
CUST_4624_PI216681199
CUST_4624_PI216681199
cpar1510
CPAG_03006
CPAG_03006
CTAATTAATACTTTGAAAGGTCATAATGAAAAGGTGATGAGTTGTGATATCAGCGATGCC
45220 4222 Kbytes .Supplementary data files not provided
Less...
More...