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Platform GPL13216 Query DataSets for GPL13216
Status Public on Mar 01, 2012
Title NimbleGen rhesus macaque promoter
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Macaca mulatta
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Annotation in this record based on UCSC rheMac2
The tilling array of orthologous regions of the NimbleGen human hg18 refseq promoter array (GPL9448)
 
Submission date Feb 23, 2011
Last update date Mar 01, 2012
Contact name Jinkai Wang
Organization name University of California, Los Angeles
Street address 650 Charles E. Young Drive South, CHS 33-228
City Los Angeles
State/province CA
ZIP/Postal code 90095-7278
Country USA
 
Samples (3) GSM678522, GSM678523, GSM678524
Series (2)
GSE27460 Rhesus macaque cerebral cortex DNA methylation profiling by MeDIP-Chip
GSE27461 Genome-wide DNA methylation analyses in the brain reveal four differentially methylated regions between humans and non-human primates

Data table header descriptions
ID
SEQUENCE Sequence of oligo
SEQ_ID Region of promoter designed in the array
Chromosome Chromosomal location
RANGE_GB
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE SEQ_ID Chromosome RANGE_GB RANGE_START LENGTH RANGE_END
CHR01FS000393518 CACCACCTAGTGAAGAAATACAACCTGGACACCACTTTGGAAGCCTGTCT chr1:393515-396215 chr1 NC_007858.1 393518 50 393567
CHR01FS000393638 TGCGTTTTTTTAGTTTCACTGCCTGGGTGTGTAACCTCACATACAATATTGCTTAGT chr1:393515-396215 chr1 NC_007858.1 393638 57 393694
CHR01FS000393738 CCACACCACTGTAAGACGCAGGATCCCCAAAGACTCTGCTCCCAGTCCAG chr1:393515-396215 chr1 NC_007858.1 393738 50 393787
CHR01FS000393818 TTTCTGAAGACACTGGGACAGGATTCACAGAGCTGGAACATCTGCAGTGA chr1:393515-396215 chr1 NC_007858.1 393818 50 393867
CHR01FS000393938 AAGCCCACCAAGAGCTACCTCTAGCTCTCAGGAGTGGGATCAGGGCAAAA chr1:393515-396215 chr1 NC_007858.1 393938 50 393987
CHR01FS000394018 GATTCTAGGCACCAGGAGATGGAGAGAAGAGCAGGAACGTGGGAACACAT chr1:393515-396215 chr1 NC_007858.1 394018 50 394067
CHR01FS000394138 TGCAATGATGGCAATGACAGCATTTGATCTGTCTCTGGAGTCACTTTGCAT chr1:393515-396215 chr1 NC_007858.1 394138 51 394188
CHR01FS000394233 TCCTCTCCCCCATACATCCCATATTGGGAACTTGCGCTTCCAGCTAAGAT chr1:393515-396215 chr1 NC_007858.1 394233 50 394282
CHR01FS000394338 AATAAATGAAACGATGGCTCTGAAAATACTGGAAAAGCAGCAAACGACAGCAGCAGAT chr1:393515-396215 chr1 NC_007858.1 394338 58 394395
CHR01FS000394423 TCTCTGGACCAACACAAGATACAATTTAAATGTAAATTAGGGTAGGCCCAGGG chr1:393515-396215 chr1 NC_007858.1 394423 53 394475
CHR01FS000394713 AGCCTAGATGACAGAGACCCTATCCCCCCCACCCCACGCAAAAAAAGAAA chr1:393515-396215 chr1 NC_007858.1 394713 50 394762
CHR01FS000394800 AGGCTCTCTTCACCCGCTTCGTCACTGTTCCTCCAGTTGGAAATTTCTCC chr1:393515-396215 chr1 NC_007858.1 394800 50 394849
CHR01FS000394890 AGATCATTCTTGCCAGATGAGCTCCCCTTGTCCCTTCTCTGAGTCCAAAG chr1:393515-396215 chr1 NC_007858.1 394890 50 394939
CHR01FS000395015 CAAAAGCCCCCAACGAGCGGACTATGCTAACTTTGGCTCTGGATTTCCTA chr1:393515-396215 chr1 NC_007858.1 395015 50 395064
CHR01FS000395095 AGCCCTGCCTTGCAGCAGGCGCGAGAGCAGGTGCTTGGGACGTGCGCTGG chr1:393515-396215 chr1 NC_007858.1 395095 50 395144
CHR01FS000395200 ACCTGGCCTGCGCTCACCCGCGCCCAGGCGCTCCGCGGGGGGCAGAAGCG chr1:393515-396215 chr1 NC_007858.1 395200 50 395249
CHR01FS000395315 CGCAAAAGTCGGCGTCAGTGCGCGTGAAGCCGGAGCATTATCAGGCTCAG chr1:393515-396215 chr1 NC_007858.1 395315 50 395364
CHR01FS000395411 GAGGGGGAAAAAGGCCTCAAGTAGTGCGGACTCCGGGCTCTGAGTGAGGC chr1:393515-396215 chr1 NC_007858.1 395411 50 395460
CHR01FS000395511 CCCGGGTCCGCAGCCTCTGGCCGCGGCGTGGTTGCCTGGGAAACGCATGC chr1:393515-396215 chr1 NC_007858.1 395511 50 395560
CHR01FS000395611 GCCGGCCGCGCATGGAGCAACTACAATTCCCAGGAGACCGCGCGGTGGGC chr1:393515-396215 chr1 NC_007858.1 395611 50 395660

Total number of rows: 383671

Table truncated, full table size 49850 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL13216_rhemac2_promoter_probes.gff.gz 2.4 Mb (ftp)(http) GFF
GPL13216_rhemac2_promoter_probes.txt.gz 16.6 Mb (ftp)(http) TXT

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