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Platform GPL13253 Query DataSets for GPL13253
Status Public on Jun 21, 2011
Title MM9 DNAMeth_HX1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description mm9
native array description file: 080430_MM9_Roloff_DNAMeth_HX1.ngd
native array description file: 080430_MM9_Roloff_DNAMeth_HX1.pos
 
Submission date Mar 07, 2011
Last update date Jan 03, 2012
Contact name Dirk Schuebeler
Organization name Friedrich Miescher Institute for Biomedical Research
Street address Maulbeerstrasse 66
City Basel
ZIP/Postal code 4058
Country Switzerland
 
Samples (10) GSM686392, GSM686393, GSM686394, GSM686395, GSM747549, GSM747550 
Series (5)
GSE27724 Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells (ChIP-chip)
GSE27866 Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells
GSE30204 DNA binding factors shape the mouse methylome at distal regulatory regions [ChIP_chip]

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_GB
RANGE_START Chromosomal start position of oligo (mm9)
RANGE_END
LENGTH Oligo length

Data table
ID SEQUENCE Chromosome RANGE_GB RANGE_START RANGE_END LENGTH
CHR01FS003043894 GGCGCGCTGTCTCTGCAGCATAGGGGCACTAACTATGCCCCTAACCAAGA chr1 NC_000067.5 3043894 3043943 50
CHR01FS003044249 TAGAAGTAGACATCTGTGTCCTCACATTGGGTGAAGATGTCGCCTGGGGC chr1 NC_000067.5 3044249 3044298 50
CHR01FS003090498 ATAAGGAACACCAGCCATTTATATCGCAACTTCTAATTACACAGACATTTCATTTTCC chr1 NC_000067.5 3090498 3090555 58
CHR01FS003090598 CATTCTCATTAAATAATTCCATTTTATAGTAGTTGGCCTACACGGTTTCTTTGT chr1 NC_000067.5 3090598 3090651 54
CHR01FS003090718 TAAACAAAATGGAACTTTTCTCTGAATGTCAAAACTCTGGTAATGTCTTAAGGCCA chr1 NC_000067.5 3090718 3090773 56
CHR01FS003090798 GTTTTTCTGGAAGATGTGTAGTAGGCTACAACAGAGTTGGCCCTGCCCCG chr1 NC_000067.5 3090798 3090847 50
CHR01FS003090918 TCTCTTCCAAAGTAATAAGCCATAAAAAAATCAGAGCACTTTCTAATATGCTTCTGGT chr1 NC_000067.5 3090918 3090975 58
CHR01FS003091008 TGTCAAGTTACACCCAGTGATCACTCTTTGTTTGAAACATCACAGGCAACAGCACATTTAAA chr1 NC_000067.5 3091008 3091069 62
CHR01FS003091098 TCTGAGGAGAGTGGCTCATAATCCTCACATTGTCATTTATTTCCTTGCTGC chr1 NC_000067.5 3091098 3091148 51
CHR01FS003091218 TCCCCTTTTCTCTGTGTGGTTAGTGTGTGTAATAGTTCCCTGGAAAAACAGATA chr1 NC_000067.5 3091218 3091271 54
CHR01FS003091313 ATCTCAGCAATAAACAGCTGGGGTGCTCATGAGAACTGGCTATTTTAATAATCATACCTACAT chr1 NC_000067.5 3091313 3091375 63
CHR01FS003091403 TGTGGTCTAGCTTATGTCCTCTATTGCTAAAGCATCAGGGTAATCAAAGCCAAAGAT chr1 NC_000067.5 3091403 3091459 57
CHR01FS003091518 CCTAGAATGCACTACTGTGTCAGTAGCAATAGCTGAAAATAGGTTTTGGAATTTCACC chr1 NC_000067.5 3091518 3091575 58
CHR01FS003091618 ACAGAATATTATTTTGACTAGCAAAGTTTATGCCCTTAGGAATGGATGATATTTGATAC chr1 NC_000067.5 3091618 3091676 59
CHR01FS003091718 ACCCAAATCTCTATTTAATTCAACCTTTGAAATCAGTCTCATAATGTGGTTTGGG chr1 NC_000067.5 3091718 3091772 55
CHR01FS003091818 CCTGCTCTTGATAAACAGACCTTAATCTCTATTTGGCTCCCACTGGATATGAT chr1 NC_000067.5 3091818 3091870 53
CHR01FS003091908 TAGTGGACATCACATAGTTCTTATAGAACTATGAAGAACAAATGGGGACATCACATAGAGCAGA chr1 NC_000067.5 3091908 3091971 64
CHR01FS003092018 ACAAAGAGCTTCTATTTTTCTGACAAGCTAAACTCAAATGACTCAAGTCAAGTTTCT chr1 NC_000067.5 3092018 3092074 57
CHR01FS003092143 AAGATTAGCATGGGCCCTGCACAAGGATGACACACAAAATATAAATATTGAGTAACAAAA chr1 NC_000067.5 3092143 3092202 60
CHR01FS003092223 ATTAATTAGGGCTTGCCTCATGTTAAAGTCAGCAACTCCAAGGCTTAGTTTTCACTG chr1 NC_000067.5 3092223 3092279 57

Total number of rows: 2079060

Table truncated, full table size 223534 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL13253_080430_MM9_Roloff_DNAMeth_HX1.ndf.gz 132.3 Mb (ftp)(http) NDF
GPL13253_080430_MM9_Roloff_DNAMeth_HX1.pos.gz 17.1 Mb (ftp)(http) POS

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