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Platform GPL13271 Query DataSets for GPL13271
Status Public on Mar 12, 2011
Title University of Groningen Lactococcus lactis MG1363 amplicon/oligo 2.6K
Technology type mixed spotted oligonucleotide/cDNA
Distribution non-commercial
Organism Lactococcus cremoris subsp. cremoris MG1363
Manufacturer university of Groningen
Manufacture protocol Standard spotting protocol on MicroGrid
Support glass
Coating aminosilane
 
 
Contributor(s) de Jong A, Holsappel S
Submission date Mar 11, 2011
Last update date Mar 12, 2011
Contact name Anne de Jong
E-mail(s) anne.de.jong@rug.nl
Phone +31 50 363 2047
Organization name university of Groningen
Department Molecular Genetics
Street address Nijenborgh 7
City Groningen
ZIP/Postal code 9747 AG
Country Netherlands
 
Samples (6) GSM759672, GSM759673, GSM759674, GSM759675, GSM759676, GSM759677
Series (1)
GSE30625 pBL1 impairs cellobiose metabolism in Lactococcus lactis

Data table header descriptions
ID
LOCUS ncbi locus tag
LOCUS_ID in house locus tag
GI_REF Gene GI number
DESCRIPTION Decription of encoded protein
AMPLICON amplicon name
REPLICATE replicate id
ROW spot row
COLUMN spot column
GRID spot grid
ORF
SPOT_ID
SEQUENCE amplicon or oligo sequence

Data table
ID LOCUS LOCUS_ID GI_REF DESCRIPTION AMPLICON REPLICATE ROW COLUMN GRID ORF SPOT_ID SEQUENCE
llmg_0001_dnaA_MG1065 llmg_0001 llmg0001a 125622883 replication initiation protein DnaA MG1065 a 9 16 9 llmg_0001 taggcagagtatcggtaaacaagcttatgatttttttattgagcctgctcaattaatgtctgtcgagcaagatactgccaatatcttgcttgatagtggaatgaaaaaagattattggaaaaaacagtccgatttgatcacaacggcaggatttgaagtctttggtcggatgattgattatgaactttatgcgaatgatgaacttactgatattgaactacgtcgtttaaataatcaatcaccggttgatgaacctctttccgttgccaagcctacttcccctttggttagtggacttaatgagaaatataattttgaaaactttgtccaaggtcctggtaaccgttggactttagccgcagcaattgctgttgctgataaacctggtgatacttacaatcccttgtttatctatggtggcgctggtttaggtaaaacccatttgatgcatgcaattgggaatcagattttaactgataatcctacagctcgaatcaaatatgtttcgtcagagaatttcgttaacgattatgttaatgcaacacgtaaaaatcagatggaaagttttgagaatacttatcgtaacttagacttacttctattagatgatgttcaatttttcagtgataaagaaggtacgaaaaacgaatttttcaatacttttaatgcactctacgataaaggct
llmg_0002_dnaN_MG1066 llmg_0002 llmg0002a 125622884 beta subunit of DNA polymerase III MG1066 a 1 15 1 llmg_0002 gttctaaagttacaattcctgctttaacaaagttaaaaattgaagttgaagaaaaaggaattaccttaattggttcaaatggtcaaatttcaatcaaaaactttttgccagctgataataaagatgcaagtatgcttatttcaggaactggttctgtcttattagaagctgctttctttgaaaatgtagtaagtcaacttcctgaagttactttggaatttatcgaaaaagaacaaaaacaagttttgttgacttctggtaaatcagaaattactttaaaaggtttagattctgaaatttatccacatttacaagaaatctctgaaggttcttctttaaaaatgaaagtgaaagttttgaaagaaattttcacagagactgtttttgctgtaagtactcaagaaaatcgtccaattttcacaggggttcacttagaaactttgtcaacgggtgaattaaaagcagtagcaactgactcacatcgaatgagccaacgtttattgcctttagaagatacagacttaaaatttgatgtaattttaccaagtaaatcaatcaatagttttaaaaatgtttttacaaatgatgaagaagagattgaaattttcatcagtggaagccaaatgcttttccaaaatgaaacaattagttattatagtcgtttgattgagggttcttatcctgatactaatcgtttgattccaaatgaagctgattatactttagatttggt
llmg_0003_rexB_MG1068 llmg_0003 llmg0003a 125622885 ATP-dependent nuclease subunit B MG1068 a 1 15 5 llmg_0003 attttctgcggaagaagagttatttattgaaagtattcaagagaaagttgcccgctttgttgttggaacttatagtgatgaaaattcactgacagctggttcggagacaatttacgtgggaacgagtcagatgattactcgctttcgaaataaatttccagtagaattaagaaaaatagcttcttcagctgtcaatgaagtttacagtaagttgacaagaattcttgatttagattctcgttttgttattactgatgaaaaaattgaattaaaagcagaagatgaaaaatattttagaatttgggaagctgaaaatcaaaaagttgaaattgaacgagtggctaaggaaattagacaaaaaatcatccaaggggcttttttcaaagattttactgttttagtcggtgatccagcagcttatgagattactttgaaagaagtttttgatctctatgagattccatttttctatgctcaagaagaatccatgagccagcatcctttagtgattttttttgaaagtctatttgccatcaaaaaaaataattatcgaacggatgatgttgtcaatcttttaaaaagtaaagtttacacagatgccaaccttgatgaagaagttattgattactttgaatactatgttcaaaagtataagatttcaggtcgcaagaaatttacagaagaatttattgagagtgaattttctcaaattgaattagttaatgaaatgcgggaaaaactacttggaagtgaatctcctttacaa
llmg_0004_rexA_MG1069 llmg_0004 llmg0004a 125622886 ATP-dependent nuclease subunit A MG1069 a 1 15 9 llmg_0004 tctcagctagtgctgggtccggaaaaacttttgttatggcgcaaagaattgttgaaaaagtcaaacaaggtattgaaattgatcgactttttatttcaactttcactaaaaaagcggctagtgagttgcgaatgcgacttgaaagagatttgaaaaaagcgcgtcaagagagttctgatgacgaggaagctcacagattgacacttgctttacagaatctttcaaacgcagatattggaacaatggatagttttactcaaaaattgacaaaagctaattttaaccgtgtaaatattgatccaaattttcgaatattggctgaccaaacagaaagtgacttgattagacaagaagtttttgaacaattggttgagtcttatttatcagctgatgaaagcttaaatatttcaaaagataaatttgaaaaattgataaaaaatttctctaaagacaggaatattcttggctttcagaaggtagtttacaccatttatcgttttgcgtcagcaactgaaaatccaataagttggttagaaaatcaatttttaaaaggttttgagacttataaatcactgacagacttatcggaagactttacagtgaatgtaaaagaaaatttactgacattttttgagctgttagaaaattcactgaccaatggtgtgattgctaaaaaaggagctggtcgtgataaggc
llmg_0005_llmg_0005_MG150026 llmg_0005 llmg0005a 125622887 conserved hypothetical protein MG150026 a 9 9 20 llmg_0005 atgctagattacaaaataggctcaattgtcgaaatgaaaaaacctcatgcctgtacagtcaaagcaactggaaaaaaagccaatgcttgggaaattacaaggcttggggctgatatcaaaattaaatgtacaaactgtaaccatgaagtgatgatgagtcgttttgacttcaataaaaaaataaaaaaagtgctcaag
llmg_0006_llmg_0006_MG1071 llmg_0006 llmg0006a 125622888 Putative HTH-type transcriptional regulator MG1071 a 1 8 7 llmg_0006 cactcaagaggaagtcgcaaaagaactatactttagtcgtcaagcgatttcccgttgggaatctaacaaaactgaaccaaattttgaaacattaattgccttagctgatttatatgattcagacttattggctttttcacaaggaattgaacctcaaaaaagaaaaaaacatatcaatctttttgctggctttggcttagtcttttttaacttcgttcttggtttctggctgataatcactactgctttgcttctcttggctctttacggtcttattttagccatattcctagctccatttatcatgatttttgctcttgttacacacaatccacatattacctttggcaatgcgaatggagcaacaggttttgactggtggtattggttagtt
llmg_0007_llmg_0007_MG1072 llmg_0007 llmg0007a MG1072 a 5 18 3 llmg_0007 tttaacagcaggtatcgttggtttaccaaacgttgggaaatcaacactttttaatgcaattacaaaagcaggcgcggaagctgcaaactatcctttcgcaacaattgacccaaatgttgggatggtagaggtaccggatgaacgtttgaacaagttaacagagttgattaaacctaaaaaaactgttccaacaacttttgaatttactgatattgcagggattgtaaaaggagcttctcgaggagaaggtttgggaaataaattcctggctaatattcgtgaagtagatgcaattattcacgttgttcgagcttttgatgatgaaaacgttatgcgtgaaaataatcgtgaagatgcctttattgacccaatggctgatattgaaacgattaacctagaattaattttggccgatttagaatcagtcaataaacgttatgcgcgtgtagaaaaaattgctcgcacagcaaaagataaagatgcggtcgcagaatttaatgttttgaaaaaactcaaacctgttcttgaagatggtaaatcagcgcgaacaattgactttgatgaagatgaaacaaaggttcttaaaagtttattcttgttgacaagtaaaccagtcctttatgtggccaatgtttcagaagatgaagttggtgaacctgataacattgagtatgttaaacaaattcgtgattttgcggcgactgaaaatgctgaagttgcggtaatttctgctcg
llmg_0008_llmg_0008_MG150235 llmg_0008 llmg0008a 125622890 Putative HTH-type transcriptional regulator MG150235 a 7 9 14 llmg_0008 ggaaatatccgaaataatcaaagaaaatcgtaaactcaaaaatctcagtcaggaagagttagcaaaggaactacacatctctcgtcaatctatctcaaaatgggagacaggaaaatcacttcccaccacagaccaacttatcttactcagtgaaattttcgattgttctttggacacgttgctcaaaggtga
llmg_0009_llmg_0009_mg13950s llmg_0009 llmg0009a 125622891 putative secreted protein mg13950s a 6 12 14 llmg_0009 gagtggcatggtatggtcttagctaaaaataaaaaaataatgatttcaacaatttcgttagtaattttgagccttgtttgtttcaaagaaaatctacctgctcaggcatcaacaaagtcattagatacaggtgaaagttttactgaagtttacaataaggacaatggtttttatttaaatagccctttttatgatatttcaaaggtttcaaaaagtttttatgttggggaaagtgggactattaatcaagttaaagttttgccgatttataatatgacgccaaaaagttctgtgaatttttatcaaaatacagcaactaataatcttattggggcaaccttaccctcgctattcacgggagcaatagctttaacacaagctggtcaatatactgctcaaaaagctggaacagctacagttgcattgacttatatgctgtctagtgatttcaaaaaagaattacttagtaaatatccggatgcttggacaaatattgcacctgctagctatggttctcctgattttatgtatgcaaaatatagcaatcaaactttctatgtaacaatcaaggaacataccgtcccactctatcgcatgtataatcctaactcaggggaacatttttatactgaaaattcctttgagcgtgattcattggtgaaggcaggctggaactatgaaggagtcgcagaagaatctccaataaagacagtctataatcaagcagtttatcgtgtttataatccgaatgctggggaccat
llmg_0011_llmg_0011_MG945 llmg_0011 llmg0011a 125622893 hypothetical protein predicted by MG945 a 4 10 5 llmg_0011 atgaaaatctatattgttgggacagttggttctggaaaatcaactttagctaggaaattgagtggaaaaagttcaatagatgtctttcacttggatagtgttgtccatgatggtgaaagacatcgaacagataaagagatttccgagtctattgaatgtatttttaaaaataacaattttattatagaggatacattgcgtgagcaattcattccgctattatcaaaagttgacaagattatttacttggatttacctaaaactttattgaaatatcgagtgattaaaagatatttaaaacaaaaaataggacttgagaaatcaacttatcgaccaagtttacagatgttaagacagatgtttattttgcaaaaaattgaccgaagtgaattgataaaagca
llmg_0012_pth_mg7284 llmg_0012 llmg0012a 125622894 Pth protein mg7284 a 2 18 15 llmg_0012 gcttgggaaatccaggcgataaatatgaaaaaacgaagcataacatgggctttatggcaattgatttactggcaaaagagctaaatgtagattttaaagaggaaaaaccttttatgtcgcttgtcgcgtcaacatttgtgaatggtgaaaaattgtttctcgtgaaacctttgactttcatgaatgaatctggccgtgcggtggcaccacttttgaaatattataatatagacgaagcagatttaacggtcatgcatgatgatttggattcaccagttgggcgcgtgcgtctaagacaaaaaggttcatcaggtggtcaaaatgggataaaatcagttattacacatgtaggaagtcaaacattcaaccgtgtaaaaattggaattggccgtccaaagcatggca
llmg_0013_mfd_MG948 llmg_0013 llmg0013a 125622895 Transcription-repair coupling factor (TRCF) MG948 a 8 17 5 llmg_0013 attttcaaagcgtgagcgaactttactgacaggtttgtcaggaactgcaaagagcttagtgatggcgaatgcctatgaaaatgttgctgacaaatacattattgttactgacagccagtttcatgcgaatgaactttatgatgaactgtcaactttgcttggtgaagaaaaagtttttcaatttttctctgatgataatatctatgcagagtttgcactagcatctaaagaccgcattgcttaccgacttgaggcacttaatttcctacttgacgaaagggcaacaggatttttggttgtgccttttttggcattacgaagctatttaccagctcccgaaaactttttagaaaattaccttttactgacctcaggagatgaatatgacttatcaaatttagttaatttactatcaaaggcaggttatgaaaaaacacagcgcgtgatgacgccaggtgaattttcaatgcgaggagatatcgttgatatttatcctttggacgcggaaaatccagtccgtttagagttttttggtgatgaagttgatacgattcgttcatttgatgtagagagtcaacgttcactgacaagtcttgagcgtttggaaatctatccggctagtgattttattttgactgacaatgagtttgataagggtgcaaaatcactgacagaaatgacaaatttgctgggtgaccaaactagcctatccgtaagcgagcaagctcgcaacggctc
llmg_0015_llmg_0015_mg7288 llmg_0015 llmg0015a 125622896 putative RNA binding protein mg7288 a 2 18 19 llmg_0015 cctccaatccactttgtgatgataatcattctatttcttctgttatgcgtgtttcactgatgagttcatacattttatcagcatcttctttacgtgtaaattcttttagttcagtcactcgaacttcaacgattttatttccaaaacggatttcaatcgtatcattgaattttacatcggacgaagatttcgctaactttccattaattttaatccgacctttgtcggcaacttctttcgcaactggacgacgtttaatcaagc
llmg_0016_llmg_0016_mg7289 llmg_0016 llmg0016a 125622897 conserved hypothetical protein mg7289 a 2 18 23 llmg_0016 ggtgtcatggcaaaacaagtgattcaactaaataataaatatagtcaaaatcagaaaaaaagaaatctaacagtagtaccaaaaagaaaacatttgggacttattttgattgtggcaatcttacttttcagtctaacaagtatgagtttgataaaatcatatgaaactttgcataagcaagtcgctttagaacagaatgcaaagaaacaatatgaaagtctttctaaagaagtaacaataaaaaaagcagaaatcaataaactgcaagaccctaactatctgcaaaaatttgctcgtagtgatgggcaagaatattctcaaagtgacgaaaaagttttcactaccgacagtcctttaattg
llmg_0017_llmg_0017_mg7291 llmg_0017 llmg0017a 125622898 putative RNA binding protein mg7291 a 2 14 14 llmg_0017 tgctgatgaacttactgacgaaatcaaaaaaagtactgacaaaactgtcagtaaaaatagtggacttttgcgttggtcacagtttccaaagaatcatccaaaagttcaaattggtgatttgattggtgttgaagttttcaaggtacatgaagatggaaaaatcgatttaaactaccaagaaaaaaatttcaaaaatgtctatgctgaatttttggaaagtagtcagcaaagaattacagagcttga
llmg_0018_llmg_0018_MG954 llmg_0018 llmg0018a 125622899 similar to Beta-lactamase A MG954 a 8 17 9 llmg_0018 ccttggtgatgcttttgatgatcattccgggcttttttgctttcccgcaatcaagatatttttctgacaaagcggtcagcaaacctaaaaatattgtcgtagcagataaagttacagaaaaagaaacatgggactcaattcctccaagagccgtggctcttcaagacatagaactctatgaagatgaacaattgacaaaatctgtaggaaagctttccgctaaaacgcagttagatatttcagaaattgctgggaaagcttttaaactcaaggatggaaaatatattttagctgacaagaaaaatattatctcagatgtcactatttctcgggaaaatacaaatagaactatctatactaataaaagtgtcaacgtattttacaatccagtaaccacttacgataaccaagtaatgacaacgctgaatgggacacatcaaattttggcggacaaaaccgctaaaactaactggggaacttattatgaaatttcattggagagtggtcaaaaaggctgggtttcagaagatgatatttccttagaaaatcctaaaatacagcaagttcaaaccctactaaataaaaaatataatgataagaaatattcaatttatgtaaaagaacttaatgacaagtttacagctggtgtaaatcaaaatcaagaaatgtattcagcaagtctttctaaaattccaattctttattggactcagaaaaggctcaatgaag
llmg_0019_mesJ_MG955 llmg_0019 llmg0019a 125622900 cell cycle protein mesJ MG955 a 9 17 1 llmg_0019 tggtaaagactcaatgaccctctttaattggctctatgagcttagagcaaagctccatatagaattgggaatagctcacattaatcatggcttacgacccgaatcagactttgaagaacaagccttacgtaaaatggccagtgacctagagattccaatttttgttgacagatttacaggagagtttacagagcaaaaagctcgggagtttcgctaccacttttttgaaaaaataatgatagctgaaaattatgatgttcttctgactgcacaccatcaaggcgatgtcgttgaaactgtattaatgcgtcagattactgggcgtcctttgagaagtttacagggaattgctgactgtcaaccctttgctaagggacaattaattcgtccattactcaaatttacaaaagaagagcttgatgcggcggtcttttatgaagattcgaccaatcaaggagtagattattttagaaatagaatacggaatcagcttattcccgaattaacaaaagaaaatcctcaattttcgcaggcaatcagtgatttaagctcagaaataaaaatggccttaacagtgattaatcaaaaaatttcggaacttgaaattgttgatgaaaaaatctcttatcacaaatttatttctcaaacaaaagaattacagcacttcattttacaagcattttttgctcagtacccagaaataaaagtaag
llmg_0020_hpt_MG956 llmg_0020 llmg0020a 125622901 hypoxanthine phosphoribosyltransferase MG956 a 4 10 9 llmg_0020 gtgggtcagttcctttcttagctgaactaatcaaacatattgattgtcatcttgaaactgattttatgaccgtatcaagctatcacggaggaacaaaatcttctggtgaagtaaaattgattttagacgttgatacagcggttaaaggtcgtgaaattttgattgttgaagatattatcgacacaggtcgcactttaaaatatctaaaagaacttttggaacatcgtggagcaaatgtaaaaattgttacgcttcttgataaaccagaaggaagaattgttgaaattaaaccagattattcaggatttaccattccaaatgaatttgttgttggctttggtttagactacgaagaaaactaccgtaacctcccatatgttggggttttgaagcctga
llmg_0021_ftsH_MG957 llmg_0021 llmg0021a 125622902 putative cell division protein MG958 a 4 2 12 llmg_0021 atgaataacaacaaacaaccaagacaaggaaattttgtaaaaaatatcttaatgtgggttatattggctattgttgttgttgtcggtttcaatttcttcttcagtagtaatcaaccaggagtggataaaattagctattcacaattgatgactaaacttgatgataataatattgaaaacgtcacaatgcaaccatcagatagcttaattactgtaacaggtgagtataaaaaacctgtaaaggtaaaaggaacaaacaatttcccacttttaggtaacactacaagtgaagttaaaaatttccaagcttatattattccaactgacagtgttgtcaaagatatccaaaatgcagctaaaagtaatgatgtaaaacttagtgtcgttcaagcgtcatcaagtggtatgtgggttcaaattctctcatatatcatcccaatgcttttatttgttggtatcttctggctcatgatgggtggaatgggcgctcgtggcggaggcggcggtggaaatccgatgtcttcggtaaatctcgcgctaaacaacaagatggtaaaacatctaaagttcgttttgctgatgttgccggttctgaagagg
llmg_0021_ftsH_MG958 llmg_0021 llmg0021a 125622902 putative cell division protein MG958 a 9 17 5 llmg_0021 gctaaggctgttgccggtgaagcaggagttcctttctatagtatctcaggttctgatttcgttgaaatgtttgtcggagtcggagcttcacgtgttcgtgatttatttgaaaatgcgaagaaaactgctccatcaatcattttcatcgatgaaattgatgctgttggtcgccaacgtggtgcaggtttaggtgggggtaatgatgaacgtgaacaaaccctcaaccaattgcttgttgaaatggacggattccaagatgatggaaactcagtaatcgttattgctgcaactaaccgttcagatgtgcttgacccagcgcttttacgtccaggtcgttttgaccgtaaagttttggtcggagcaccagatgttaaaggtcgtgaagctgtccttaaagtccatgctaaaaacaaacctttagcaagtgatgttgatttacacactgttgctacacaaactcctggttatgtcggagctgatttggaaaatgttttgaatgaagctgctcttgttgctgcacgtcaaaataaaaaagaaatcaatgctgctgatattgatgaaggaatggaccgtgcaatggctggtcctgctaagaaagatcgtattcaatcaatgcgtgagcgtgaaatcgtggcttatcacgaagcaggtcatgctattgttggtctcgttcttgaaaatggatctactgttcgtaaagttaccgttgtccctcgtgggcgtatcggtggttacatgcttgctcttccag

Total number of rows: 2647

Table truncated, full table size 1605 Kbytes.




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