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Platform GPL13295 Query DataSets for GPL13295
Status Public on Nov 13, 2011
Title Agilent-028485 Myk-Array v3b
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism soil metagenome
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Agilent-028485 Myk-Array v3b 028483
Design ID: 028485
FuncPhyloArray v3b
A custom-made EcoChip microarray consisting of about 9000 probes targeting expressed fungals genes and about 5000 probes targeting the precursor-rRNA of different fungal lineages.
Source organisms of the array features are mainly soil fungi and plants.
 
Submission date Mar 17, 2011
Last update date Mar 17, 2011
Contact name Alfons R Weig
E-mail(s) a.weig@uni-bayreuth.de
Organization name University of Bayreuth
Department Genomics and Bioinformatics
Street address Universitaetsstrasse 30
City Bayreuth
ZIP/Postal code 95447
Country Germany
 
Samples (8) GSM692846, GSM692847, GSM692848, GSM692849, GSM692850, GSM692851 
Series (1)
GSE28018 A Transcriptome—Targeting EcoChip for Assessing Functional Mycodiversity

Data table header descriptions
ID
SEQUENCE probe sequence
NCBI accession NCBI sequence accessions identical to the probe sequence (April 2010)
GB_ACC GenBank Accession number
probe characteristics target type (specific mRNA, specific ITS precursor-rRNA, conserved protein domain, Eukarya normalization probes)
SPOT_ID

Data table
ID SEQUENCE NCBI accession GB_ACC probe characteristics SPOT_ID
Act_01_60000001 TAGTGCCACATAAGCTAGCTTCTCCTTAACGTCACGAACAATTTCACGTTCTGCAGTTGT AF002689 AF002689 conserved protein domain
Act_01_60000002 TAGGGCGACGTAGGCAAGCTTCTCCTTAATATCCCTGACAATTTCCCGCTCGGCAGTGGT AB109015 AB109015 conserved protein domain
Act_01_60000003 TAGGGCGACAAAGGCCAGCTTCTCCTTTATGTCCCTCACGATTTCCCGTTCTGCCGTCGT ZMU60507 U60507 conserved protein domain
Act_01_60000004 TAGGGCCACAAAGGCCAGCTTCTCCTTTATGTCTCTCACGATTTCCCGTTCTGCCGTCGT NM_001147841 NM_001147841 conserved protein domain
Act_01_60000005 TAGGGCAACGTACGCGAGCTTTTCTTTAATGTCTCTAACAATCTCACGCTCGGCTGTTGT AB196261 AB196261 conserved protein domain
Act_01_60000006 TAGGGCAACATATGCAAGTTTTTCCTTCATGTCACGGACAATTTCTCGCTCAGCAGAGGT DQ812100/GQ339774/V00450/GMU60496 DQ812100 conserved protein domain
Act_01_60000007 TAGGGCAACATATGCAAGTTTTTCCATCATGTCACGGACAATTTCTCGCTCAGCAGAGGT GMU60506 U60506 conserved protein domain
Act_01_60000008 TAGGGCAACATACGCGAGCTTTTCTTTAATGTCTCTAACAATTTCACGCTCAGCTGTTGT AB196262 AB196262 conserved protein domain
Act_01_60000009 TAGGGCAACATAAGCAAGCTTCTCTTTCACGTCCCTGACAATTTCCCTCTCTGCAGTTGT AF246716 AF246716 conserved protein domain
Act_01_60000010 TAGCGCGACATATGCAAGCTTTTCCTTGATGTCACGGACAATTTCCCGCTCGGCAGTGGT NM_001153459 NM_001153459 conserved protein domain
Act_01_60000011 TAGAGCGATGTAGGCTAGCTTTTCCTTGATGTCTCGAACGATTTCACGCTCTGCAGTTGT AB330989 AB330989 conserved protein domain
Act_01_60000012 TAGAGCGACGTAAGCAAGTTTCTCTTTGATGTCACGGACAATTTCTCGCTCGGCGGTGGT GQ339782 GQ339782 conserved protein domain
Act_01_60000013 TAGAGCAATGTAAGAGAGCTTCTCTTTCATGTCTCTAACAATTTCACGTTCAGCAGTTGT AY088111/BT004315/NM_125328 AY088111 conserved protein domain
Act_01_60000014 TAGAGATACATAGGCTAATTTCTCCTTCATATCTCGGACAATCTCGCGCTCTGCGGTGGT GQ339779 GQ339779 conserved protein domain
Act_01_60000015 TAAGGCAACATAGGCAAGCTTCTCTTTGATATCCCTAACAATTTCTCGCTCTGCAGTCGT FJ462710 FJ462710 conserved protein domain
Act_01_60000016 TAACGCCACATATCCAAGCTTTTCTTTAATATCACGCACAATTTCCCTTTCAGCTGTTGT AF002691 AF002691 conserved protein domain
Act_01_60000017 GTCTGGAACTCTGCAAACAGACTCCTTGACGTCACTAGCAATAGCTCTCATGCAGTACAA XM_002465958/BT038602/EU968371 XM_002465958 conserved protein domain
Act_01_60000018 GTCGGACAGCCGGAACACCGTCTCCTTCAGATCCGCGGCGATCTCGCGTTGCTTAAACAG GG663742 GG663742 conserved protein domain
Act_01_60000019 GTCGCTCAGCCTGCACACCGTCTCCTTGAGATCCGCCGCAATCTCGCGCTGCTTGAACAG XM_002504830 XM_002504830 conserved protein domain
Act_01_60000020 GTACGCGACGTAACACAACTCCTCCTTGATCAAACGCGCCGTTTCCACGTCCGACGTTCG XM_001422737 XM_001422737 conserved protein domain

Total number of rows: 11262

Table truncated, full table size 1422 Kbytes.




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