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Platform GPL13321 Query DataSets for GPL13321
Status Public on Mar 31, 2014
Title CRIBI Tiling array for the identification of 5' end of pig miRNAs
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Sus scrofa
Manufacturer CRIBI biotechnology centre http://microcribi.cribi.unipd.it
Manufacture protocol 12K Combimatrix microarray were synthesized using the Combimatrix synthesizer (Combimatrix) that allows in-situ synthesis of oligonucleotide probes through the phosphoramidites chemistry.
 
 
Submission date Mar 23, 2011
Last update date Mar 31, 2014
Contact name Gerolamo Lanfranchi
E-mail(s) stefano.cagnin@unipd.it
Phone +39-0498276219
Organization name University of Padova
Department CRIBI - Biotechnology Center and Biology Department
Lab Functional Genomics Lab
Street address Via U. Bassi, 58/B
City Padova
ZIP/Postal code 35131
Country Italy
 
Samples (9) GSM697090, GSM697091, GSM697092, GSM697093, GSM697094, GSM697095 
Series (2)
GSE28139 Identification of the 5' end of the pig miRNA by the RAKE technology
GSE28637 Discovering, evolution, biogenesis, expression and target prediction of porcine micro-RNAs: new regulatory gene expression network in different tissues.

Data table header descriptions
ID
Array # Number of the array
Feature # Number of the spot.
Column Number of the array column.
Row Number of the array row.
Probe # Number of the probe.
Name Probe name
SEQUENCE Probe sequence
Length Probe length
SPOT_ID

Data table
ID Array # Feature # Column Row Probe # Name SEQUENCE Length SPOT_ID
1 1 1 1 1 2 QC-3prime TGACTGACTGGACTGTGGGTGTGCGATACGTGTCC 35
2 1 2 2 1 3 QC-5prime TGGGTGTGCGATACGTGTCCGACTGACTGACTGAC 35
3 1 3 3 1 43 ENSSSCT00000019703_18_16054348_16054429_+_3p_-1 TTTTTTTGAAATCAGTGTTCTTGGGGGAGTGCTCGCTCTA 40
4 1 4 4 1 44 ENSSSCT00000019703_18_16054348_16054429_+_3p_-2 TTTTTTGAAATCAGTGTTCTTGGGGGAGGTGCTCGCTCTA 40
5 1 5 5 1 45 ENSSSCT00000019703_18_16054348_16054429_+_3p_-3 TTTTTGAAATCAGTGTTCTTGGGGGAGCGTGCTCGCTCTA 40
6 1 6 6 1 46 ENSSSCT00000019703_18_16054348_16054429_+_3p_-4 TTTTTAAATCAGTGTTCTTGGGGGAGCCGTGCTCGCTCTA 40
7 1 7 7 1 47 ENSSSCT00000019703_18_16054348_16054429_+_3p_-5 TTTTTAATCAGTGTTCTTGGGGGAGCCCGTGCTCGCTCTA 40
8 1 8 8 1 48 ENSSSCT00000019703_18_16054348_16054429_+_3p_0 TTTTTTTTGAAATCAGTGTTCTTGGGGGGTGCTCGCTCTA 40
9 1 9 9 1 49 ENSSSCT00000019703_18_16054348_16054429_+_3p_1 TTTTTATTTGAAATCAGTGTTCTTGGGGGTGCTCGCTCTA 40
10 1 10 10 1 50 ENSSSCT00000019703_18_16054348_16054429_+_3p_2 TTTTTCATTTGAAATCAGTGTTCTTGGGGTGCTCGCTCTA 40
11 1 11 11 1 51 ENSSSCT00000019703_18_16054348_16054429_+_3p_3 TTTTTCCATTTGAAATCAGTGTTCTTGGGTGCTCGCTCTA 40
12 1 12 12 1 52 ENSSSCT00000019703_18_16054348_16054429_+_3p_4 TTTTTACCATTTGAAATCAGTGTTCTTGGTGCTCGCTCTA 40
13 1 13 13 1 53 ENSSSCT00000019711_15_73700020_73700104_-_5p_10 TTTTTCAATGCATCTAGAATTCTGGGGGGTGCTCGCTCTA 40
14 1 14 14 1 54 ENSSSCT00000019711_15_73700020_73700104_-_5p_11 TTTTTAATGCATCTAGAATTCTGGGGGTGTGCTCGCTCTA 40
15 1 15 15 1 55 ENSSSCT00000019711_15_73700020_73700104_-_5p_12 TTTTTATGCATCTAGAATTCTGGGGGTGGTGCTCGCTCTA 40
16 1 16 16 1 56 ENSSSCT00000019711_15_73700020_73700104_-_5p_13 TTTTTTGCATCTAGAATTCTGGGGGTGGGTGCTCGCTCTA 40
17 1 17 17 1 57 ENSSSCT00000019711_15_73700020_73700104_-_5p_14 TTTTTGCATCTAGAATTCTGGGGGTGGAGTGCTCGCTCTA 40
18 1 18 18 1 58 ENSSSCT00000019711_15_73700020_73700104_-_5p_15 TTTTTCATCTAGAATTCTGGGGGTGGAGGTGCTCGCTCTA 40
19 1 19 19 1 59 ENSSSCT00000019711_15_73700020_73700104_-_5p_16 TTTTTATCTAGAATTCTGGGGGTGGAGTGTGCTCGCTCTA 40
20 1 20 20 1 60 ENSSSCT00000019711_15_73700020_73700104_-_5p_8 TTTTTCCCAATGCATCTAGAATTCTGGGGTGCTCGCTCTA 40

Total number of rows: 12544

Table truncated, full table size 1507 Kbytes.




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Supplementary data files not provided
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