GEO help: Mouse over screen elements for information.
Status
Public on Aug 09, 2011
Title
NOAA Karenia brevis v3 (11K on 8x15K array format)
Technology type
in situ oligonucleotide
Distribution
non-commercial
Organism
Karenia brevis Manufacturer
Agilent
Manufacture protocol
60-mer oligonucleotide probes were designed from EST contigs derived from Karenia brevis cDNA libraries using Array Designer v 4.0 following Agilent's recommendations for Tm, GC content, and position. Probes were submitted to Agilent's eArray website for randomization and addition of control probes. For details on printing see Agilent's website www.agilent.com. 60-mer oligonucleotide probes were designed from EST contigs derived from Karenia brevis cDNA libraries using Array Designer v 4.0 following Agilent's recommendations for Tm, GC content, and position. Probes were submitted to Agilent's eArray website for randomization and addition of control probes. For details on printing see Agilent's website www.agilent.com. 60-mer oligonucleotide probes were designed from EST contigs derived from Karenia brevis cDNA libraries using Array Designer v 4.0 following Agilent's recommendations for Tm, GC content, and position. Probes were submitted to Agilent's eArray website for randomization and addition of control probes. For details on printing see Agilent's website www.agilent.com.
Citation(s)
21729317 , 15976935 Submission date
Apr 04, 2011
Last update date
Aug 09, 2011
Contact name
Frances M Van Dolah
E-mail(s)
fran.vandolah@noaa.gov Organization name
Marine Biotoxins Program, NOAA Center for Coastal Environmental Health and Biomolecular Research
Street address
219 Fort Johnson Rd
City
Charleston
State/province
SC
ZIP/Postal code
29412
Country
USA
Samples (78)
GSM701185 , GSM701186 , GSM701187 , GSM701188 , GSM701189 , GSM701190
GSM701191 ,
GSM701192 ,
GSM701193 ,
GSM701194 ,
GSM701195 ,
GSM701196 ,
GSM701197 ,
GSM701198 ,
GSM701199 ,
GSM701200 ,
GSM701201 ,
GSM701202 ,
GSM702268 ,
GSM702269 ,
GSM702270 ,
GSM702271 ,
GSM702272 ,
GSM702273 ,
GSM702274 ,
GSM702275 ,
GSM702276 ,
GSM702277 ,
GSM702278 ,
GSM702279 ,
GSM702280 ,
GSM702281 ,
GSM702282 ,
GSM702283 ,
GSM702284 ,
GSM702285 ,
GSM791157 ,
GSM791158 ,
GSM791159 ,
GSM791160 ,
GSM791161 ,
GSM791162 ,
GSM791163 ,
GSM791164 ,
GSM791165 ,
GSM791166 ,
GSM791167 ,
GSM791168 ,
GSM791169 ,
GSM791170 ,
GSM791171 ,
GSM1125497 ,
GSM1125498 ,
GSM1125499 ,
GSM1125500 ,
GSM1125501 ,
GSM1125502 ,
GSM1125503 ,
GSM1125504 ,
GSM1125505 ,
GSM1125506 ,
GSM1125507 ,
GSM1125508 ,
GSM1125509 ,
GSM1125510 ,
GSM1125511 ,
GSM1125512 ,
GSM1125513 ,
GSM1125514 ,
GSM1125515 ,
GSM1125516 ,
GSM1125517 ,
GSM1125518 ,
GSM1125519 ,
GSM1125520 ,
GSM1125521 ,
GSM1125522 ,
GSM1125523 Series (5)
GSE28362 Transcriptional Responses of Karenia brevis to Nitrogen Depletion and Addition
GSE28419 Transcriptional Responses of Karenia brevis to Phosphorus Depletion and Addition
GSE31913 Transcriptome Remodeling Associated with Chronological Aging in the Dinoflagellate, Karenia brevis
GSE46174 Global Analysis of mRNA Half-lives Following Biosynthetic Labeling in a Dinoflagellate, Karenia brevis
GSE46175 Global Analysis of de novo Transcription Following Biosynthetic Labeling in a Dinoflagellate, Karenia brevis
Data table header descriptions ID Primary Sequence Name Sequence name
Control Type Control type
SEQUENCE Sequence Description Sequence description from top BLASTx hit
Accession Accession number of top BLASTx hit
SPOT_ID
Data table ID Primary Sequence Name Control Type SEQUENCE Sequence Description Accession SPOT_ID 1
GE_BrightCorner
pos
CONTROL
2
DarkCorner
pos
CONTROL
3
DarkCorner
pos
CONTROL
5
Contig_381
GCGGCGGTAGCTGCACTTTCTTTGGCACGCAGAATGAGACTAGGATCGATGTCAATACCC
PREDICTED: similar to hypothetical protein...
ref|XP_546957.1|
6
Contig_6520
ATCTGGCATTACAAGCTCTTTGGTCTCTGTCTCGCTTCCGGTTGTGGCCTGCTCCTGCGC
PREDICTED: similar to human immunodeficien...
ref|XP_593747.1|
8
Contig_5697
AGCCGACGCATTGCGAGTGCTGGATGGACATAAGGATGATGTGCTGACAGTCAAATGGGC
WD-40 repeat protein [Lycopersicon esculentu...
gb|AAB70241.1|
9
Contig_10239
GGCTTCAAAGTCGTTGGCGTGGAGGCTAATCCCCTGTCAGTTCGTGCAGTCTTCCAAGAT
hypothetical protein ML2346 [Mycobacterium...
ref|NP_302525.1|
11
Contig_7708
GCTGATGAACTTCGGATGAAGGTAATGCTTGTGCCTGATGCAAGAGCAGAACACCTCTCC
PREDICTED: similar to connective tissue gr...
ref|XP_417744.1|
13
Contig_8801
AGCAAGTTAAGTTCTTCAACGAGAGTGGTATGCACGCCGAGTGGCTCATGGTCGAGTGGT
unnamed protein product [Tetraodon nigrovir...
emb|CAF97179.1|
14
Contig_6723
TGGGTGAGAACAGCTTGACTCAAAGAGTTGGCGACATTGTCCAGACAGTGCAGGCATCCA
putative membrane protein [Burkholderia ps...
ref|YP_110157.1|
16
Contig_3549
CGGAAGACTTACTGAGACCACGACCACATCCACCACATCCACGCCGTTCGGAGAGTTGTG
conserved domain protein [Methylococcus caps...
gb|AAU91874.1|
18
Contig_4704
AGCACAGTCAACACACCTCACGATGGTACGACTATTGATGGAAAAGCACTTGGCACGACT
lipase [Clostridium tetani E88] gi282030...
ref|NP_781602.1|
22
Contig_10400
GAGTTGTTCCGGGAGCAAGGTTCCCTCTCAGGGCAGGCAAACCTCTGGTACATCATCTCC
COG0457: FOG: TPR repeat [Nostoc punctif...
ref|ZP_00106722.1|
24
Contig_6838
ACGTGAATGGCTCGCTTACAATCGGACTGGAGGGTCATGCAACTCATCTCAAACAGGTGC
PREDICTED: similar to FLJ46321 protein, pa...
ref|XP_584253.1|
25
Contig_5789
GCGTCTTGAGAGCATTCAAAAGCACAATCGGCAAAATCGCTTCGACCCTTTGACACAGCA
hypothetical protein SPO1671 [Silicibacter p...
gb|AAV94956.1|
26
Contig_8092
GCAAGCGAGCAGGCGGAGCAGTGGGGTTGGATGAGTAGTTCTAGTTGTTTTGAAGACAGT
PREDICTED: similar to preexisting nuclear ...
ref|XP_543054.1|
30
Contig_8694
GGCATCACTGCCCTCCAGCGAAATACATCGGAAAGACTCCCGTGGAAATCGTTGCTCGAT
hypothetical protein [Homo sapiens]
emb|CAD39093.1|
31
Contig_1178
ACTCATCTTCCCAAACATTGACTTGTCTTCAGTTGCACTTCTCTGTGTCGGCACAGGGTT
unknown protein [Arabidopsis thaliana] gi1...
gb|AAM20120.1|
32
Contig_4697
GCTGGGTTGCGTGAAGACCAGGCTCTTAACATGAATGTTCGAGTCATCAATGAGACAGGC
rabaptin, RAB GTPase binding effector prot...
ref|NP_079092.1|
33
Contig_4320
GGGTCCACGTTTGAAGTGCTGCCCATAGAAGATGTCACAACGACGGCTCCGATTCTAAAG
PREDICTED: similar to KIAA0960 protein, pa...
ref|XP_607681.1|
10799 1411 Kbytes .Supplementary data files not provided
Less...
More...