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Platform GPL13389 Query DataSets for GPL13389
Status Public on Oct 01, 2011
Title Agilent-015747 Danio rerio LU/IBL_D.rerio_44k (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Danio rerio
Manufacturer Agilent
Manufacture protocol the arrays were produced according to manufacturer's protocol, check website: http://www.chem.agilent.com/en-US/products/instruments/dnamicroarrays/pages/default.aspx
Catalog number none
Support glass
Coating aminosilane
 
 
Submission date Apr 08, 2011
Last update date Jan 18, 2013
Contact name Oliver Stockhammer
E-mail(s) o.w.stockhammer@amc.uva.nl
Organization name AMC
Department Medical Microbiology
Street address Meibergdreef 15
City Amsterdam
State/province NH
ZIP/Postal code 1105 AZ
Country Netherlands
 
Samples (12) GSM703837, GSM703838, GSM703839, GSM703840, GSM703841, GSM703842 
Series (2)
GSE28481 Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection using a static immersion systems [experiment A]
GSE28486 Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection

Data table header descriptions
ID FeatureNum
Row
Col
chr_coord
SubTypeMask
SubTypeName
Start
SEQUENCE 60-mer nucleotide sequence of each oligo
ProbeUID
ControlType
ProbeName
GeneName
SystematicName
GB_ACC GenBank Accession identifier of a gene or biological sequence
GENE_SYMBOL available gene name
DESCRIPTION additional information about the gene or sequence
SPOT_ID

Data table
ID Row Col chr_coord SubTypeMask SubTypeName Start SEQUENCE ProbeUID ControlType ProbeName GeneName SystematicName GB_ACC GENE_SYMBOL DESCRIPTION SPOT_ID
1 1 1 260 BrightCorner 0 0 1 GE_BrightCorner GE_BrightCorner GE_BrightCorner GE_BrightCorner
2 1 2 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
3 1 3 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
4 1 4 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
5 1 5 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
6 1 6 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
7 1 7 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
8 1 8 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
9 1 9 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
10 1 10 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
11 1 11 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner DarkCorner
12 1 12 unmapped 0 0 AGAGCTTACAGAGAAGTTTTCGGATGTCTGGGTTGTTTCTGGGCCGCTGATGAAGCCGCA 3 0 A_15_P112039 A_15_P112039 A_15_P112039 CO936728 Dr.123280 "AGENCOURT_30550296 NIH_ZGC_5 Danio rerio cDNA clone IMAGE:7415786 5', mRNA sequence [CO936728]"
13 1 13 unmapped 0 0 ACATTTCCACATGTGTCTATCATTCCTGTCTGTATCATTGTGGGTTGGACAGGGATATGG 5 0 LOLS14466 LOLS14466 LOLS14466 BI670851 zgc:154030 "fp57c06.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone 4786162 3', mRNA sequence."
14 1 14 unmapped 0 0 TGACAGAGTCTCTGGGCACTGCAGTGATCTCTAGTGGCGCAAAGACGAGATGAGGGAATC 7 0 LOLS01332 LOLS01332 LOLS01332 BI886190 "ZF637-1-000445 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_12K7;MPMGp637K0712 5', mRNA sequence."
15 1 15 unmapped 0 0 CAGCAATGTTGGACACTGTTGTGTTCCATTGATTTCCCCCATCCATCTCTGTTTGTGCAT 9 0 A_15_P115532 A_15_P115532 A_15_P115532 CN020050 zgc:162272 "AGENCOURT_20186052 NIH_ZGC_15 Danio rerio cDNA clone IMAGE:7226726 5', mRNA sequence [CN020050];LOLannot:wu:fk84g05"
16 1 16 unmapped 0 0 GGCTTGTTTTTGTTCCTTAAAGGAAGTCACAAGACAGAACTCAGGCATTGGAGTAGATGT 11 0 LOLS09551 LOLS09551 LOLS09551 BI881974 ogtl "fm87c06.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA clone 4467826 3', mRNA sequence."
17 1 17 unmapped 0 0 GGCCATTGAAATAATTGGTCCATTCCCAGAAACTGTACATGGGAGGGATACACACATTGC 13 0 A_15_P110432 A_15_P110432 A_15_P110432 NO INFORMATION
18 1 18 unmapped 0 0 CCCAACAGACCAGCCTCCATCTTCAATTGTTCAGGCTACAGCCACAACACCGCGATTTGA 15 0 LOLS09241 LOLS09241 LOLS09241 BI672215 Dr.133168 "ft36c03.x1 Gong zebrafish testis Danio rerio cDNA clone 5152517 3', mRNA sequence."
19 1 19 unmapped 0 0 CTCCATGTTTCAACAACAGAGACTGCTGCAGCTTTGGGTTGAACATATATCTAAAGGTAG 17 0 A_15_P112875 A_15_P112875 A_15_P112875 BC070016 eif4b "Danio rerio cDNA clone IMAGE:6962641, partial cds. [BC070016]"
20 1 20 unmapped 0 0 CCAAGAAGACATGACCTTCATCAACACTCAGCAAAGACGGCAAATATTCAGATTGAGAGA 19 0 A_15_P100301 A_15_P100301 A_15_P100301 XM_683453 wu:fk85b04 "Q8IW32 (Q8IW32) R3H domain (Binds single-stranded nucleic acids) containing, partial (28%) [TC281445]"

Total number of rows: 44787

Table truncated, full table size 10320 Kbytes.




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