NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL13401 Query DataSets for GPL13401
Status Public on Apr 14, 2011
Title Species Specific Phosphorylation Array
Technology type spotted peptide or protein
Distribution custom-commercial
Organisms Bos taurus; Ovis aries
Manufacturer JPT Peptide Technologies
Manufacture protocol Peptide derivatives (50 nmol) were dissolved in 25 μL of printing solution (70% DMSO, 25% 0.2 M sodium acetate pH 4.5, 5 % glycerol; by
vol.) and transferred into 384-well microtiterplates. Two droplets of 0.5 nL peptide solution were deposited per spot on aldehyde functionalized glass slides using the non-contact printer Nanoplotter of GESIM (Großerkmannsdorf, Germany) equipped with 8 piezoelectric NanoTips
(GESIM, Großerkmannsdorf, Germany). Printed peptide microarrays were kept at room temperature for 5 hours, washed with deionised water, quenched for 1 hour with 50% aqueous hydroxylamine, washed extensively with water followed by ethanol, and dried under a stream of nitrogen. Each block of 300 peptides was printed in triplicate on each slide. The final physical dimensions of the array were 19.5 X 19.5 mm with each peptide spot having a diameter of ~350 μm and peptide spots being 750 μm apart.
Support glass
Coating unknown
 
Description JPT Peptide Technologies applies its unique PepStar™ peptide microarray platform to generate customized peptide microarrays on glass slides for biomarker discovery, immuno monitoring and detection and validation of protein interactions. In addition, PepStar™ technology also enables characterization of enzyme target families such as kinases, phosphatases and proteases as well as methyl, glycosyl, acetyl transferases and lysine deacetylases.
Peptides are immobilized on glass slides via a flexible linker. Chemoselective coupling generates microarrays of directed and covalently attached peptides. Multiple identical copies of peptide microarrays can be prepared at unmatched prices and turnaround times. Incubation can be performed manually or automated and read-out is performed via fluorescence. This results in low backgrounds and high sensitivity.
 
Web link http://www.jpt.com/products/peptides_and_arrays/screening_and_discovery/pepstar/
Contributor(s) Turner-Brannen E, Choi K, Arsenault R, El-Gabalawy H, Napper S, Mookherjee N
Citation(s) 17765917
Submission date Apr 12, 2011
Last update date Apr 15, 2011
Contact name Neeloffer Mookherjee
E-mail(s) mookherj@cc.umanitoba.ca
Phone 204-272-3115
Fax 204-480-1362
Organization name University of Manitoba
Department Internal Medicine
Lab Manitoba Ctr Proteomics and Systems Biology
Street address 799-JBRC, 715 McDermot Ave
City Winnipeg
State/province MB
ZIP/Postal code R3E3P4
Country Canada
 
Samples (6) GSM709824, GSM709825, GSM709826, GSM709827, GSM709828, GSM709829
Series (1)
GSE28649 Protein phosphorylations, mediated by pro-inflammatory cytokines IL-32g and IL-17A/F

Data table header descriptions
ID
Name Common Protein Name
SP_ACC UniProtKB/Swiss-Prot
Target target amino acid on the protein

Data table
ID Name SP_ACC Target
1 4E-BP1 Q13541 T37
2 4E-BP1 Q13541 T46
3 ADCY8 P40145 Y406
4 Akt1 P31749
5 Akt1 P31749
6 Akt1 P31749 S124/9
7 Akt1 P31749 Y326
8 Akt3 Q9Y243 S120
9 Akt3 Q9Y243 T447
10 APE1 P27695 S289
11 Aplp1 P51693 Y643
12 ApoE P02649 S314
13 A-Raf P10398 Y301
14 ASK1 Q99683 S1033
15 ASK1 Q99683 S83
16 ASK1 Q99683 S966
17 ATF-2 P15336 S44
18 ATF-2 P15336 T51/3/5
19 ATF-4 P18848 S245
20 axin-1 O15169 S486

Total number of rows: 300

Table truncated, full table size 6 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13401_full_design.txt.gz 7.1 Kb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap