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Status
Public on Apr 03, 2012
Title
NimbleGen_Custom_Chloroethene_array_V02
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organisms
Shewanella ; Pseudomonas ; Methylosinus ; Nitrosomonas ; Mycobacterium ; Geobacter ; Thauera ; Desulfitobacterium ; Dehalobacter ; Sulfurospirillum ; Dehalococcoides
Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
Format: 12x135K Each probe on the microarray was synthesized in eight replicates, and a total of 5,707 random probes was used to determine the background noise. Chlorinated solvents metabolic capacities (Environmental). The Platform data table reflects a condensed representation of the expression array's replicate features. The .ndf file is linked below as a supplementary file.
Submission date
Apr 13, 2011
Last update date
Apr 03, 2012
Contact name
Peyret Pierre
E-mail(s)
Pierre.PEYRET@univ-bpclermont.fr
Phone
+33473405139
Organization name
CNRS - Blaise Pascal University
Lab
Laboratory Microorganisms: Genome and Environment
Street address
24, avenue des landais
City
AUBIERE
ZIP/Postal code
63177
Country
France
Samples (33)
GSM707929 , GSM707930 , GSM707931 , GSM707932 , GSM707933 , GSM707934
GSM707935 ,
GSM707936 ,
GSM707937 ,
GSM707938 ,
GSM707939 ,
GSM707940 ,
GSM707941 ,
GSM707942 ,
GSM707943 ,
GSM707944 ,
GSM707945 ,
GSM707946 ,
GSM707947 ,
GSM707948 ,
GSM707949 ,
GSM707950 ,
GSM707951 ,
GSM707952 ,
GSM707953 ,
GSM707954 ,
GSM707955 ,
GSM707956 ,
GSM707957 ,
GSM707958 ,
GSM707969 ,
GSM707970 ,
GSM707971
Series (3)
GSE28606
Monitoring of functional gene responses to ERD (enhanced reductive dechlorination) from four TCE-contaminated sites
GSE28608
Monitoring of functional gene responses to biostimulation from a TCE-contaminated site
GSE28609
Monitoring of functional gene responses to biostimulation from TCE-contaminated sites using a functional microarray
Data table header descriptions
ID
PROBE_ID used as SEQ_ID
GENE_ID
Gene name used in the study
ACC_NUM
GenBank/RefSeq accession number(s) and coordinates of the sequence(s) targeted
GB_LIST
GenBank accession number
RANGE_GB
GenBank or RefSeq accession number
RANGE_START
Start coordinate relative to RANGE_GB
RANGE_END
End coordinate relative to RANGE_GB
Data table
ID
GENE_ID
ACC_NUM
GB_LIST
RANGE_GB
RANGE_START
RANGE_END
S_1
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_2
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_3
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_4
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_5
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_6
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_7
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_8
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_9
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_10
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_11
amoB
L08050 REGION: 1081..2343
L08050
1081
2343
S_12
todC1
J04996 REGION: 620..1972
J04996
620
1972
S_13
todC1
J04996 REGION: 620..1972
J04996
620
1972
S_14
todC1
J04996 REGION: 620..1972
J04996
620
1972
S_15
todC1
J04996 REGION: 620..1972
J04996
620
1972
S_16
todC1
J04996 REGION: 620..1972
J04996
620
1972
S_17
todC1
J04996 REGION: 620..1972
J04996
620
1972
S_18
todC1
J04996 REGION: 620..1972
J04996
620
1972
S_19
todC1
J04996 REGION: 620..1972
J04996
620
1972
S_20
todC1
J04996 REGION: 620..1972
J04996
620
1972
Total number of rows: 760 Table truncated, full table size 117 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL13409_Nimblegen_Custom_Chloroethene_array_V02.ndf.gz
4.3 Mb
(ftp) (http)
NDF