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Platform GPL13409 Query DataSets for GPL13409
Status Public on Apr 03, 2012
Title NimbleGen_Custom_Chloroethene_array_V02
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Shewanella; Pseudomonas; Methylosinus; Nitrosomonas; Mycobacterium; Geobacter; Thauera; Desulfitobacterium; Dehalobacter; Sulfurospirillum; Dehalococcoides
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description Format: 12x135K

Each probe on the microarray was synthesized in eight replicates, and a total of 5,707 random probes was used to determine the background noise.

Chlorinated solvents metabolic capacities (Environmental).

The Platform data table reflects a condensed representation of the expression array's replicate features. The .ndf file is linked below as a supplementary file.
 
Submission date Apr 13, 2011
Last update date Apr 03, 2012
Contact name Peyret Pierre
E-mail(s) Pierre.PEYRET@univ-bpclermont.fr
Phone +33473405139
Organization name CNRS - Blaise Pascal University
Lab Laboratory Microorganisms: Genome and Environment
Street address 24, avenue des landais
City AUBIERE
ZIP/Postal code 63177
Country France
 
Samples (33) GSM707929, GSM707930, GSM707931, GSM707932, GSM707933, GSM707934 
Series (3)
GSE28606 Monitoring of functional gene responses to ERD (enhanced reductive dechlorination) from four TCE-contaminated sites
GSE28608 Monitoring of functional gene responses to biostimulation from a TCE-contaminated site
GSE28609 Monitoring of functional gene responses to biostimulation from TCE-contaminated sites using a functional microarray

Data table header descriptions
ID PROBE_ID used as SEQ_ID
GENE_ID Gene name used in the study
ACC_NUM GenBank/RefSeq accession number(s) and coordinates of the sequence(s) targeted
GB_LIST GenBank accession number
RANGE_GB GenBank or RefSeq accession number
RANGE_START Start coordinate relative to RANGE_GB
RANGE_END End coordinate relative to RANGE_GB

Data table
ID GENE_ID ACC_NUM GB_LIST RANGE_GB RANGE_START RANGE_END
S_1 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_2 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_3 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_4 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_5 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_6 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_7 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_8 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_9 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_10 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_11 amoB L08050 REGION: 1081..2343 L08050 1081 2343
S_12 todC1 J04996 REGION: 620..1972 J04996 620 1972
S_13 todC1 J04996 REGION: 620..1972 J04996 620 1972
S_14 todC1 J04996 REGION: 620..1972 J04996 620 1972
S_15 todC1 J04996 REGION: 620..1972 J04996 620 1972
S_16 todC1 J04996 REGION: 620..1972 J04996 620 1972
S_17 todC1 J04996 REGION: 620..1972 J04996 620 1972
S_18 todC1 J04996 REGION: 620..1972 J04996 620 1972
S_19 todC1 J04996 REGION: 620..1972 J04996 620 1972
S_20 todC1 J04996 REGION: 620..1972 J04996 620 1972

Total number of rows: 760

Table truncated, full table size 117 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13409_Nimblegen_Custom_Chloroethene_array_V02.ndf.gz 4.3 Mb (ftp)(http) NDF

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