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Platform GPL13627 Query DataSets for GPL13627
Status Public on May 20, 2011
Title Agilent-022297 Wheat Gene Expression Microarray (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Triticum aestivum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description T. aestivum (Wheat) Oligo Microarray

Arrays of this design have barcodes that begin with 16022297 or 2522297.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL13636.
 
Submission date May 20, 2011
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (82) GSM734483, GSM734484, GSM734485, GSM734486, GSM734487, GSM734488 
Series (5)
GSE29640 Light effect on the hormonal and transcriptional status of winter and spring wheat plants during cold hardening
GSE96739 Aluminum stress study in wheat and wheat-rye addition lines 3R and 6R.
GSE98634 Root transcriptional profile of wheat seedlings in response to Fe, S and dual (Fe and S) deficiencies.
Relations
Alternative to GPL13636

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UNIGENEID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner GE_BrightCorner pos CONTROL
2 266 168 DarkCorner DarkCorner pos CONTROL
3 266 166 DarkCorner DarkCorner pos CONTROL
4 266 164 DarkCorner DarkCorner pos CONTROL
5 266 162 DarkCorner DarkCorner pos CONTROL
6 266 160 DarkCorner DarkCorner pos CONTROL
7 266 158 DarkCorner DarkCorner pos CONTROL
8 266 156 DarkCorner DarkCorner pos CONTROL
9 266 154 DarkCorner DarkCorner pos CONTROL
10 266 152 DarkCorner DarkCorner pos CONTROL
11 266 150 DarkCorner DarkCorner pos CONTROL
12 266 148 A_99_P218521 A_99_P218521 FALSE ta|TA57562_4565|tc|TC430280 unmapped Rep: Os02g0581100 protein - Oryza sativa subsp. japonica (Rice), partial (65%) [TC430280] TTTCATGCACGCGCCCTTTCGTCTGTCGAGTGATCTTCTTCCCTGAAAATGAATTGATCA
13 266 146 A_99_P387507 A_99_P387507 FALSE ta|TA107371_4565|tc|TC445052 unmapped CGTATAACTATGGTAATAGCTAGGCATAGTATCATCAAGATCCAATTGATCTCTGGAAGT
14 266 144 A_99_P498692 A_99_P498692 FALSE Ta.22376 ta|CA632054|tc|TC431138 unmapped Rep: Glycosyltransferase - Sorghum bicolor (Sorghum) (Sorghum vulgare), partial (29%) [TC431138] CTCATGTTTGGTCACTTCCTGATTTGTTGTTGTTCTTGTGGTGCCAAAAGATCATTTCCT
15 266 142 A_99_P384842 A_99_P384842 FALSE ta|TA106717_4565|tc|TC396101 unmapped Rep: Copine I-like - Oryza sativa subsp. japonica (Rice), partial (95%) [TC396101] GTCCCACTTCATTTGCACCTATGATTGAGACTGCTATTGGGATTGTTGATAGTAGTGGTG
16 266 140 A_99_P198556 A_99_P198556 FALSE ta|TA50403_4565 unmapped AGTCGAGATCAGGTGAGGGATTTTGCTCTTCAAGTGCTATGCTCGAGTTTGATGTTGGTT
17 266 138 A_99_P203341 A_99_P203341 FALSE Ta.54569 ta|TA52025_4565|ta|TA52203_4565|ta|TA51216_4565|ta|CJ561723 unmapped TCTTGTTTTGTGTTACCTACCTGCATACACAAATACACATACTAGTATATGATCTGATCG
18 266 136 A_99_P515482 A_99_P515482 FALSE tc|TC438548 unmapped GO:0009733(response to auxin stimulus) AACTAGATGTGATTCGTCGGGTGATCTAATCTAATACTAGCACTAGTATGTTCTTGGTAT
19 266 134 A_99_P566727 A_99_P566727 FALSE tc|TC458656 unmapped TGTAACTGCACTGCATGCATGCTACGACGCACTGTATTATCCACCTAGTTGTTGATTGTT
20 266 132 A_99_P457997 A_99_P457997 FALSE Ta.3624 ta|CA499368 unmapped AATGGATCCTCAAAAATTGGAGTCAGTTTTGACAAACCAATCCCTGGGGGCATTGATCTA

Total number of rows: 45220

Table truncated, full table size 10289 Kbytes.




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