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Platform GPL13654 Query DataSets for GPL13654
Status Public on May 27, 2011
Title NimbleGen Desulfovibrio vulgaris Hildenborough 2004K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Nitratidesulfovibrio vulgaris str. Hildenborough
Manufacturer NimbleGen
Manufacture protocol see manufacturer's website
 
 
Submission date May 26, 2011
Last update date May 27, 2011
Contact name Morgan N Price
E-mail(s) morgannprice@yahoo.com
Organization name Lawrence Berkeley Lab
Department Physical Biosciences Division
Lab Arkin group
Street address 1 Cyclotron Road Mailstop 977-152
City Berkeley
State/province CA
ZIP/Postal code 94720
Country USA
 
Samples (2) GSM731851, GSM731852
Series (2)
GSE29556 Evidence-based annotation of genes and transcripts in Desulfovibrio vulgaris Hildenborough (tiling array)
GSE29560 Evidence-based annotation of genes and transcripts in Desulfovibrio vulgaris Hildenborough

Data table header descriptions
ID
SEQUENCE
SCAFFOLD
RANGE_START
LENGTH
STRAND
RANGE_GB GenBank accession
RANGE_END

Data table
ID SEQUENCE SCAFFOLD RANGE_START LENGTH STRAND RANGE_GB RANGE_END
PROBE_0000001 GTCTGCGGGCTTCGGCTGGACAATTGGGCTGTGGGCGGCTAGGGTCTCCTCGGCAACGGG 1944 3570798 60 - NC_002937.3 3570857
PROBE_0000002 GCGGGCTTCGGCTGGACAATTGGGCTGTGGGCGGCTAGGGTCTCCTCGGCAACGGGCCGA 1944 3570794 60 - NC_002937.3 3570853
PROBE_0000003 GCTTCGGCTGGACAATTGGGCTGTGGGCGGCTAGGGTCTCCTCGGCAACGGGCCGAGGTA 1944 3570790 60 - NC_002937.3 3570849
PROBE_0000004 CGGCTGGACAATTGGGCTGTGGGCGGCTAGGGTCTCCTCGGCAACGGGCCGAGGTAGCCG 1944 3570786 60 - NC_002937.3 3570845
PROBE_0000005 TGGACAATTGGGCTGTGGGCGGCTAGGGTCTCCTCGGCAACGGGCCGAGGTAGCCGCCCG 1944 3570782 60 - NC_002937.3 3570841
PROBE_0000006 CAATTGGGCTGTGGGCGGCTAGGGTCTCCTCGGCAACGGGCCGAGGTAGCCGCCCGCTTG 1944 3570778 60 - NC_002937.3 3570837
PROBE_0000007 TGGGCTGTGGGCGGCTAGGGTCTCCTCGGCAACGGGCCGAGGTAGCCGCCCGCTTGTCCT 1944 3570774 60 - NC_002937.3 3570833
PROBE_0000008 CTGTGGGCGGCTAGGGTCTCCTCGGCAACGGGCCGAGGTAGCCGCCCGCTTGTCCTCCTG 1944 3570770 60 - NC_002937.3 3570829
PROBE_0000009 GGGCGGCTAGGGTCTCCTCGGCAACGGGCCGAGGTAGCCGCCCGCTTGTCCTCCTGAAGG 1944 3570766 60 - NC_002937.3 3570825
PROBE_0000010 GGCTAGGGTCTCCTCGGCAACGGGCCGAGGTAGCCGCCCGCTTGTCCTCCTGAAGGTTCG 1944 3570762 60 - NC_002937.3 3570821
PROBE_0000011 AGGGTCTCCTCGGCAACGGGCCGAGGTAGCCGCCCGCTTGTCCTCCTGAAGGTTCGTTTT 1944 3570758 60 - NC_002937.3 3570817
PROBE_0000012 TCTCCTCGGCAACGGGCCGAGGTAGCCGCCCGCTTGTCCTCCTGAAGGTTCGTTTTCTCT 1944 3570754 60 - NC_002937.3 3570813
PROBE_0000013 CTCGGCAACGGGCCGAGGTAGCCGCCCGCTTGTCCTCCTGAAGGTTCGTTTTCTCTTCGT 1944 3570750 60 - NC_002937.3 3570809
PROBE_0000014 GCAACGGGCCGAGGTAGCCGCCCGCTTGTCCTCCTGAAGGTTCGTTTTCTCTTCGTTGTT 1944 3570746 60 - NC_002937.3 3570805
PROBE_0000015 CGGGCCGAGGTAGCCGCCCGCTTGTCCTCCTGAAGGTTCGTTTTCTCTTCGTTGTTCCCG 1944 3570742 60 - NC_002937.3 3570801
PROBE_0000016 CCGAGGTAGCCGCCCGCTTGTCCTCCTGAAGGTTCGTTTTCTCTTCGTTGTTCCCGTTTC 1944 3570738 60 - NC_002937.3 3570797
PROBE_0000017 GGTAGCCGCCCGCTTGTCCTCCTGAAGGTTCGTTTTCTCTTCGTTGTTCCCGTTTCCCAG 1944 3570734 60 - NC_002937.3 3570793
PROBE_0000018 GCCGCCCGCTTGTCCTCCTGAAGGTTCGTTTTCTCTTCGTTGTTCCCGTTTCCCAGTAGC 1944 3570730 60 - NC_002937.3 3570789
PROBE_0000019 CCCGCTTGTCCTCCTGAAGGTTCGTTTTCTCTTCGTTGTTCCCGTTTCCCAGTAGCTTAT 1944 3570726 60 - NC_002937.3 3570785
PROBE_0000020 CTTGTCCTCCTGAAGGTTCGTTTTCTCTTCGTTGTTCCCGTTTCCCAGTAGCTTATAATC 1944 3570722 60 - NC_002937.3 3570781

Total number of rows: 2003627

Table truncated, full table size 219630 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13654_090904_AD_D_vulgaris_tiling_HX1.ndf.gz 87.5 Mb (ftp)(http) NDF

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