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Status
Public on Jun 16, 2011
Title
Fusarium graminearum febit in situ oligonucleotide array
Technology type
in situ oligonucleotide
Distribution
non-commercial
Organism
Fusarium graminearum
Manufacturer
febit biomed
Manufacture protocol
DNA-Synthesis took place in the Geniom One Instrument - a benchtop device that utilizes microfluidics for light activated oligonucleotide synthesis - at febit biomed facilities (Heidelberg, Germany). One probe for each gene was synthesized on the array. Blank probes consisting of only one T were used for background correction. Probes were 50-mers.
Support
glass
Coating
unknown
Description
Geniom One, all-in-one instrument for sample loading, hybridization, washing, staining, and detection of biochips.
Contributor(s)
Carapito R
Submission date
Jun 14, 2011
Last update date
Jun 16, 2011
Contact name
Raphael Carapito
Organization name
Ecole Supérieure de Biotechnologie de Strasbourg
Street address
Bd SĂ©bastien Brandt
City
Illkirch
ZIP/Postal code
67400
Country
France
Samples (16)
GSM741353 , GSM741920 , GSM741921 , GSM741922 , GSM741923 , GSM741924
Series (1)
GSE29973
Transcriptional responses of Fusarium graminearum to plant cell wall substrates
Data table header descriptions
ID
ORF
ORF Name
SEQUENCE
oligonucleotide probe sequence
SPOT_ID
Data table
ID
ORF
SEQUENCE
SPOT_ID
F2.1-MM-control
GCAGTGCTGCCAAAACCATGAGTGA
--F2.1-MM-control
F2.1-PM-control
GCAGTGCTGCCATAACCATGAGTGA
--F2.1-PM-control
Chloramphenicol
CAAACTGAAACGTTTTCATCGCTCT
--Chloramphenicol
Kanamycin
GCGGACCGCTATCAGGACATAGCGT
--Kanamycin
Blank-control
--Blank-control
FG00001
FG00001
TTTTATCACACATCTACGGACCTTTTGCCTGCCGACATCCGCGGTTTCTT
FG00002
FG00002
CGTTGTGTTATCGGTACAAGGACTTCGTGCTTCAATTTGGAGGTTTGCCC
FG00003
FG00003
AACGAATAGAAGGCGTCTCGGAAGACGCGTTGGTCACTTTATCAATGCTG
FG00004
FG00004
ATGTACTACGGTGACCTGAAGAGGAACTTTCTCGCTCAAGGAGAAACTGG
FG00005
FG00005
AATGTTATACCTTGCATACCTGTCCACCTGTTGGTGCTGCTGGACTGACT
FG00006
FG00006
TAACTTCTACGGGAAAGAAGCCCAGCGCAAAGTTTCGTAACCGCCATATC
FG00007
FG00007
CCAAGGAATGCAAAGTGTGTGGACCTGATTAGAGCTGTGGAGAAGGAACA
FG00008
FG00008
GTGGGGAGAAGATCGATGAAGCATGGTGGTTTGCTACCAAGAACGGTTTT
FG00009
FG00009
CTTGGACGTGAACTGGAATGTAAATGGCCCTGTCAAAGGTGATCCGGTTT
FG00010
FG00010
GTCCGTAAGAATGCTTTCGGGAGATCTCCACATGAGTCTGGGAAACTCAA
FG00011
FG00011
ACCCTTGTAGGTGGATATTGCATAAGAGACCCATGTGAACAGACCCATGC
FG00012
FG00012
TTGCCATGCCTACCAAGGACTTTAAGGTGTCGCGGTTTGAAGCTTTCAAC
FG00013
FG00013
ATTGGAGCAGATAGATGAGGTCTTTAATGACCATGCGGCCCAGGAAGAGT
FG00014
FG00014
ATTCTTGACTACTATGGTCTACTCACTGTCAGCCGAGAGGGTTGGTTGAC
FG00015
FG00015
TATACTTGCAGTGGAGAACTCAACTGCTACGGAGCTCATGTCGAGAGACT
Total number of rows: 11644 Table truncated, full table size 773 Kbytes .
Supplementary data files not provided