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Platform GPL13767 Query DataSets for GPL13767
Status Public on Aug 30, 2011
Title Agilent Mouse 60K lincRNA Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4102A, AMADID 025725 G4852A
Support glass
 
 
Submission date Jun 24, 2011
Last update date Jan 17, 2013
Contact name Mitchell Guttman
E-mail(s) mguttman@mit.edu
Organization name Broad Institute
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Samples (449) GSM748909, GSM748910, GSM748911, GSM748912, GSM748913, GSM748914 
Series (1)
GSE30245 lincRNAs act in the circuitry controlling pluripotency and differentiation

Data table header descriptions
ID
PrimaryAccession Unique Name
RefSeqAccession RefSeq Accession number
GB_ACC GenBank accession
SPOT_ID
UniGeneID unigene id
EntrezGeneID entrez gene id
GeneSymbol gene symbol
GeneName gene name
EnsemblID ensembl id
TIGRID TIGR id
GO Gene ontology
Description Gene description
GenomicCoordinates genomic coordinates
Cytoband cytoband location
SEQUENCE

Data table
ID PrimaryAccession RefSeqAccession GB_ACC SPOT_ID UniGeneID EntrezGeneID GeneSymbol GeneName EnsemblID TIGRID GO Description GenomicCoordinates Cytoband SEQUENCE
A_51_P210310 X00438 X00438 Mm.333026 21580 Tcrb-J T-cell receptor beta, joining region ENSMUST00000103291 TC1772425 M.musculus thymocyte mRNA for T-cell antigen receptor chain (86T1). [X00438] chr6:41488583-41489260 mm|6qB1 GCCGAGCAGACTGTGGGATTACCTCAGCATCCTATCAACAAGGGGTCTTGTCTGCCACCA
A_51_P249627 NM_029791 NM_029791 NM_029791 Mm.197387 76895 Bicd2 bicaudal D homolog 2 (Drosophila) ENSMUST00000110085 TC1577241 GO:0005515(protein binding)|GO:0005737(cytoplasm)|GO:0005794(Golgi apparatus)|GO:0005856(cytoskeleton)|GO:0005886(plasma membrane)|GO:0006810(transport)|GO:0007018(microtubule-based movement) Mus musculus bicaudal D homolog 2 (Drosophila) (Bicd2), transcript variant 2, mRNA [NM_029791] chr13:49475953-49476012 mm|13qA5 CCCTGGCCAACCTGAAGAGCAAGTATGAGAACGAGAAGGCCATGGTGACCGAGACCATGA
A_51_P311159 NM_012044 NM_012044 NM_012044 Mm.296007 26970 Pla2g2e phospholipase A2, group IIE ENSMUST00000030531 TC1587473 GO:0003674(molecular_function)|GO:0004623(phospholipase A2 activity)|GO:0005509(calcium ion binding)|GO:0005575(cellular_component)|GO:0005576(extracellular region)|GO:0006644(phospholipid metabolic process)|GO:0008150(biological_process)|GO:0016042(lipid catabolic process)|GO:0016787(hydrolase activity)|GO:0046872(metal ion binding) Mus musculus phospholipase A2, group IIE (Pla2g2e), mRNA [NM_012044] chr4:138438363-138438422 mm|4qD3 AGTGTGACAAGAGAGCTGCTCTTTGCTTTCGCCACAACCTGAACACTTACAACCGCAAGT
A_51_P224013 NM_009387 NM_009387 NM_009387 Mm.2661 21877 Tk1 thymidine kinase 1 ENSMUST00000141939 TC1574687 GO:0000166(nucleotide binding)|GO:0004797(thymidine kinase activity)|GO:0005524(ATP binding)|GO:0005625(soluble fraction)|GO:0005737(cytoplasm)|GO:0006260(DNA replication)|GO:0008270(zinc ion binding)|GO:0016301(kinase activity)|GO:0016310(phosphorylation)|GO:0016740(transferase activity)|GO:0046104(thymidine metabolic process)|GO:0046872(metal ion binding)|GO:0051289(protein homotetramerization) Mus musculus thymidine kinase 1 (Tk1), mRNA [NM_009387] chr11:117677164-117677105 mm|11qE2 TGCCACTCGCTGAAGCCGTTTTCAGTTCCCTTCTTGATTGCCAAGATGCCTCAATGCAGA
A_51_P287677 NM_011296 NM_011296 NM_011296 Mm.324762 20084 Rps18 ribosomal protein S18 ENSMUST00000008812 TC1573638 GO:0003674(molecular_function)|GO:0003676(nucleic acid binding)|GO:0003723(RNA binding)|GO:0003735(structural constituent of ribosome)|GO:0005622(intracellular)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0005840(ribosome)|GO:0006412(translation)|GO:0006414(translational elongation)|GO:0015935(small ribosomal subunit)|GO:0019843(rRNA binding)|GO:0022627(cytosolic small ribosomal subunit)|GO:0030529(ribonucleoprotein complex) Mus musculus ribosomal protein S18 (Rps18), mRNA [NM_011296] chr17:34089043-34088984 mm|17qB1 ACACCAAGACCACTGGCCGCAGGGGCCGAACTGTGGGTGTATCCAAGAAGAAATGAGTCT
A_51_P385812 NM_008352 NM_008352 NM_008352 Mm.239707 16160 Il12b interleukin 12b ENSMUST00000102796 TC1587196 GO:0002323(natural killer cell activation involved in immune response)|GO:0002860(positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target)|GO:0002862(negative regulation of inflammatory response to antigenic stimulus)|GO:0004896(cytokine receptor activity)|GO:0005125(cytokine activity)|GO:0005126(cytokine receptor binding)|GO:0005515(protein binding)|GO:0005576(extracellular region)|GO:0005615(extracellular space)|GO:0007050(cell cycle arrest)|GO:0007165(signal transduction)|GO:0007166(cell surface receptor linked signaling pathway)|GO:0010224(response to UV-B)|GO:0010535(positive regulation of activation of JAK2 kinase activity)|GO:0016020(membrane)|GO:0016477(cell migration)|GO:0019233(sensory perception of pain)|GO:0030101(natural killer cell activation)|GO:0032729(positive regulation of interferon-gamma production)|GO:0032816(positive regulation of natural killer cell activation)|GO:0034393(positive regulation of smooth muscle cell apoptosis)|GO:0042093(T-helper cell differentiation)|GO:0042102(positive regulation of T cell proliferation)|GO:0042104(positive regulation of activated T cell proliferation)|GO:0042164(interleukin-12 alpha subunit binding)|GO:0042510(regulation of tyrosine phosphorylation of Stat1 protein)|GO:0042517(positive regulation of tyrosine phosphorylation of Stat3 protein)|GO:0042520(positive regulation of tyrosine phosphorylation of Stat4 protein)|GO:0042523(positive regulation of tyrosine phosphorylation of Stat5 protein)|GO:0042803(protein homodimerization activity)|GO:0042832(defense response to protozoan)|GO:0043514(interleukin-12 complex)|GO:0044130(negative regulation of growth of symbiont in host)|GO:0045785(positive regulation of cell adhesion)|GO:0046982(protein heterodimerization activity)|GO:0048662(negative regulation of smooth muscle cell proliferation)|GO:0050671(positive regulation of lymphocyte proliferation) Mus musculus interleukin 12b (Il12b), mRNA [NM_008352] chr11:44227121-44227180 mm|11qB1.1 GCTCTTCAATCAGGGCTTCGTAGGTACATTAGCTTTTGTGACAACCAATAAGAACATAAT
A_88_P01028616 chr14:55671783-55680316_F chr14:55671783-55680316_F 4 AAAGCTAAGTTCTAGGGCAGACTGATGGGTATTAAGTGGGCAACTAACTTAGGAAGCCTG
A_51_P300806 NM_021297 NM_021297 NM_021297 Mm.38049 21898 Tlr4 toll-like receptor 4 ENSMUST00000048096 TC1581907 GO:0000187(activation of MAPK activity)|GO:0001530(lipopolysaccharide binding)|GO:0001875(lipopolysaccharide receptor activity)|GO:0002218(activation of innate immune response)|GO:0002224(toll-like receptor signaling pathway)|GO:0002282(microglial cell activation involved in immune response)|GO:0002537(nitric oxide production involved in inflammatory response)|GO:0002755(MyD88-dependent toll-like receptor signaling pathway)|GO:0002756(MyD88-independent toll-like receptor signaling pathway)|GO:0002758(innate immune response-activating signal transduction)|GO:0004872(receptor activity)|GO:0004888(transmembrane receptor activity)|GO:0005515(protein binding)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0005887(integral to plasma membrane)|GO:0006954(inflammatory response)|GO:0006955(immune response)|GO:0006979(response to oxidative stress)|GO:0007165(signal transduction)|GO:0007250(activation of NF-kappaB-inducing kinase activity)|GO:0007252(I-kappaB phosphorylation)|GO:0009617(response to bacterium)|GO:0009897(external side of plasma membrane)|GO:0009986(cell surface)|GO:0010552(positive regulation of gene-specific transcription from RNA polymerase II promoter)|GO:0010572(positive regulation of platelet activation)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0030890(positive regulation of B cell proliferation)|GO:0031224(intrinsic to membrane)|GO:0032496(response to lipopolysaccharide)|GO:0032497(detection of lipopolysaccharide)|GO:0032609(interferon-gamma production)|GO:0032689(negative regulation of interferon-gamma production)|GO:0032700(negative regulation of interleukin-17 production)|GO:0032707(negative regulation of interleukin-23 production)|GO:0032715(negative regulation of interleukin-6 production)|GO:0032720(negative regulation of tumor necrosis factor production)|GO:0032722(positive regulation of chemokine production)|GO:0032727(positive regulation of interferon-alpha production)|GO:0032728(positive regulation of interferon-beta production)|GO:0032729(positive regulation of interferon-gamma production)|GO:0032732(positive regulation of interleukin-1 production)|GO:0032733(positive regulation of interleukin-10 production)|GO:0032735(positive regulation of interleukin-12 production)|GO:0032755(positive regulation of interleukin-6 production)|GO:0032757(positive regulation of interleukin-8 production)|GO:0032760(positive regulation of tumor necrosis factor production)|GO:0032874(positive regulation of stress-activated MAPK cascade)|GO:0042116(macrophage activation)|GO:0042346(positive regulation of NF-kappaB import into nucleus)|GO:0042535(positive regulation of tumor necrosis factor biosynthetic process)|GO:0042742(defense response to bacterium)|GO:0043065(positive regulation of apoptosis)|GO:0043123(positive regulation of I-kappaB kinase/NF-kappaB cascade)|GO:0043388(positive regulation of DNA binding)|GO:0043548(phosphoinositide 3-kinase binding)|GO:0045084(positive regulation of interleukin-12 biosynthetic process)|GO:0045087(innate immune response)|GO:0045121(membrane raft)|GO:0045348(positive regulation of MHC class II biosynthetic process)|GO:0045359(positive regulation of interferon-beta biosynthetic process) Mus musculus toll-like receptor 4 (Tlr4), mRNA [NM_021297] chr4:66503724-66503782 mm|4qC1 TGTGATAGGGCTTTAAATAGTTGAGCTAATTCAGAAAAGTATGGAGGTTTCTTGGTAAAC
A_52_P6588 NM_010011 NM_010011 NM_010011 Mm.10742 13117 Cyp4a10 cytochrome P450, family 4, subfamily a, polypeptide 10 ENSMUST00000129918 TC1595997 GO:0001676(long-chain fatty acid metabolic process)|GO:0004497(monooxygenase activity)|GO:0005506(iron ion binding)|GO:0005783(endoplasmic reticulum)|GO:0005789(endoplasmic reticulum membrane)|GO:0005792(microsome)|GO:0006631(fatty acid metabolic process)|GO:0009055(electron carrier activity)|GO:0016020(membrane)|GO:0016491(oxidoreductase activity)|GO:0018685(alkane 1-monooxygenase activity)|GO:0019825(oxygen binding)|GO:0020037(heme binding)|GO:0046872(metal ion binding)|GO:0055114(oxidation reduction) Mus musculus cytochrome P450, family 4, subfamily a, polypeptide 10 (Cyp4a10), mRNA [NM_010011] chr4:115197445-115197926 mm|4qD1 TTGGCCAAACAAGCTTGTCACTTTGCCCATGATCACACAGATGGAGTGATCAAGATGAGA
A_51_P430362 AK041100 AK041100 Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530083C18 product:unclassifiable, full insert sequence. [AK041100] chr1:172793937-172793878 mm|1qH3 GGGAGGACCTAACTCAGTTTATGTTAATATATCTGCTTATCTGTTTATATATCTTTGCAT
A_88_P01031535 chr5:120253747-120281800_R chr5:120253747-120281800_R 5 AAGGCATCCCAGTCCCTCCACGCGGAACCGAAAGGGAAGGGTGGAAGAGCGTTGCTTTAA
A_88_P01029945 chr15:77583249-77587433_R chr15:77583249-77587433_R 5 AGACAGAACCTTCATTGAGGAAGCCGCTGAGTACCTGCAGCACACATCGGGCAGGGAAGA
A_51_P166728 NM_011138 NM_011138 NM_011138 Mm.76683 18987 Pou2f2 POU domain, class 2, transcription factor 2 ENSMUST00000139449 NP053542 GO:0002335(mature B cell differentiation)|GO:0002380(immunoglobulin secretion involved in immune response)|GO:0003677(DNA binding)|GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0019904(protein domain specific binding)|GO:0030528(transcription regulator activity)|GO:0043565(sequence-specific DNA binding)|GO:0045449(regulation of transcription)|GO:0045941(positive regulation of transcription)|GO:0048305(immunoglobulin secretion)|GO:0048469(cell maturation) Mus musculus POU domain, class 2, transcription factor 2 (Pou2f2), transcript variant 2, mRNA [NM_011138] chr7:25879840-25878678 mm|7qA3 GTCCCAAGCTTCTAGCAGTCTGAGCACAACAGTTACTACCTTATCCTCAGCTGTGGGGAC
A_51_P200249 NM_146506 NM_146506 NM_146506 Mm.377538 258499 Olfr945 olfactory receptor 945 ENSMUST00000076903 TC1599771 GO:0004871(signal transducer activity)|GO:0004872(receptor activity)|GO:0004930(G-protein coupled receptor activity)|GO:0004984(olfactory receptor activity)|GO:0007165(signal transduction)|GO:0007186(G-protein coupled receptor protein signaling pathway)|GO:0007608(sensory perception of smell)|GO:0016021(integral to membrane) Mus musculus olfactory receptor 945 (Olfr945), mRNA [NM_146506] chr9:39065997-39065938 mm|9qA5.1 ACGGAGAAGAACATCATCTCCTACCTTGGATGCATGGCTCAGCTCTACTTCTTCATCATT
A_88_P01029524 chr2:104598616-104610233_R chr2:104598616-104610233_R 5 GTGGAGGACCTATTTGAAAAATTTGGAGAACTTCTAAATCATGTACAACAGAAATGTTCC
A_52_P981004 chr4:144649553-144649612 chr4:144649553-144649612 mm|4qE1 GTCTTTCTCATTTTCTGTATTCTCTTGGATTCATTTACTTAACATTTCACATTATTACTT
A_52_P62349 NM_028173 NM_028173 NM_028173 Mm.28765 72265 Tram1 translocating chain-associating membrane protein 1 ENSMUST00000027068 TC1573121 GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0005783(endoplasmic reticulum)|GO:0006810(transport)|GO:0008150(biological_process)|GO:0015031(protein transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0055085(transmembrane transport) Mus musculus translocating chain-associating membrane protein 1 (Tram1), mRNA [NM_028173] chr1:13555471-13555412 mm|1qA3 CCTGCAAGCCCTTTTGAAAAGTAATGCCTACTTGATTTCTATTAAAAAGAAAAAGGTACC
A_51_P198775 NM_201364 NM_201364 NM_201364 Mm.28152 381306 BC055324 cDNA sequence BC055324 ENSMUST00000045876 TC1579260 GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) Mus musculus cDNA sequence BC055324 (BC055324), mRNA [NM_201364] chr1:165884286-165884227 mm|1qH2.2 TTACAGGGTAAAATATGAATGGCCTGTGTATCGACAGAACTGGGCTGACTCTTCAGATGC
A_88_P01029775 chr11:53599506-53672758_R chr11:53599506-53672758_R 5 ATAGGTTCTGTCTGGCTGTCCTGAGGGCCTCAGTTTACAGGCGCTCATCCAGAGACTGCT
A_51_P248444 NM_172380 NM_172380 NM_172380 Mm.284366 224143 Poglut1 protein O-glucosyltransferase 1 ENSMUST00000153187 TC1574772 GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0005783(endoplasmic reticulum)|GO:0008150(biological_process) Mus musculus protein O-glucosyltransferase 1 (Poglut1), mRNA [NM_172380] chr16:38525846-38525787 mm|16qB4 GCAGAGACTGCAGTCTTCATATGTGACCATATCATGAAGTGGCAATTTATAGAGCACTCA

Total number of rows: 59452

Table truncated, full table size 26746 Kbytes.




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