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Platform GPL13787 Query DataSets for GPL13787
Status Public on Jun 30, 2011
Title NimbleGen Homo sapiens CGH HX3 array [090130_HG18_Decipher_opt]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Genome build: hg18
NimbleGen Homo Sapiens 9105 HG18 WG CGH HX3
 
Submission date Jun 29, 2011
Last update date Aug 31, 2011
Contact name Stephen W Scherer
E-mail(s) stephen.scherer@sickkids.ca
Organization name The Hospital for Sick Children
Department Genetics and Genomic Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
 
Samples (18) GSM751239, GSM751240, GSM751241, GSM751242, GSM751243, GSM751244 
Series (2)
GSE25893 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
GSE30307 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (NimbleGen 720K)

Data table header descriptions
ID
SEQUENCE
RANGE_GB
RANGE_START
RANGE_END
SPOT_ID

Data table
ID SEQUENCE RANGE_GB RANGE_START RANGE_END SPOT_ID
CHR01FS000017636 TGCTACAGTATGACTGCTAATAATACCTACACATGTTAGAACCATTCTGACTCCTCAAGA NC_000001.9 17636 17695
CHR01FS000020237 AGCTAGTTTGAATTTTAGATAAACAACGAATAATTTCGTAGCATAAATATGTCCCA NC_000001.9 20237 20296
CHR01FS000020307 CATACTTATGCTAAAAAACATTATTGGTTGTTTATCTGAGATTCAGAATTAAGCATTT NC_000001.9 20307 20366
CHR01FS000020317 CTAAAAAACATTATTGGTTGTTTATCTGAGATTCAGAATTAAGCATTTTATATTT NC_000001.9 20317 20376
CHR01FS000032027 GGCTGTAGCTAGAACTGCCTTAATGATAAGAGATCATGCTGAATTACCCATGCAAAACCT NC_000001.9 32027 32086
CHR01FS000032108 ACTTTATTCAAGAGCCTATTGTGCAAGCATAAGTGGCTGAGTCAGGTTCTCAACTCTGCT NC_000001.9 32108 32167
CHR01FS000037196 TGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTC NC_000001.9 37196 37255
CHR01FS000037304 ACACCATGAATGAGGGCATCTTCAACAATGGTGGATGACGTCTTAGTTTCCCTCAACTCA NC_000001.9 37304 37363
CHR01FS000041830 TACGTGGACGACGTTGTGTTGAACATGGGTGAGTAAGACTGAAGCAGCCGTAATTACTGC NC_000001.9 41830 41889
CHR01FS000044827 TCCACAGATCTAACCTCCTACTTTCCTGGATGCCACACAAGATCTTCCACTCAACAAGTC NC_000001.9 44827 44886
CHR01FS000048466 TCTGAACATCCTTTTTGTTTAATATAAGTCTGCATTTCCTGTTTGAAGATATGTGTCCCA NC_000001.9 48466 48525
CHR01FS000049283 TCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTC NC_000001.9 49283 49342
CHR01FS000050787 TTCCCACTTCATCATTACTAACCTCACTCACTCTGAACTTGATGAGAGCACCTGAGCATT NC_000001.9 50787 50846
CHR01FS000052308 TAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTC NC_000001.9 52308 52367
CHR01FS000052987 TGTATATTCTGCTGGCCAACCTATCGCTCATTGACTTGAGCCTTTCATCTACCACAGTTC NC_000001.9 52987 53046
CHR01FS000055650 AGTATTATGCTGGCAACAATTGTCGAGTCCTCCTCCTCACTCTTCTGGGCTAATTTGTTC NC_000001.9 55650 55709
CHR01FS000057336 AGATGGCAAGTGTAAACTCTATACCTTCATGTCTCCCGTGGAATGTTAGTGATCAATTTC NC_000001.9 57336 57395
CHR01FS000059489 AACTTGCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGC NC_000001.9 59489 59548
CHR01FS000060615 AGAGCTGGATTCAACTCTACTGACTCTTATTAATCATGATTTTGGGCACATTACGTAGCT NC_000001.9 60615 60674
CHR01FS000071400 CCAACTGAAGTCTAATCTAAATGTTCTGAGCATGTTCAAAGTAAGCTAGGCCAACCTATA NC_000001.9 71400 71459

Total number of rows: 967222

Table truncated, full table size 85698 Kbytes.




Download family Format
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MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13787_090130_HG18_Decipher_opt.ndf.gz 44.5 Mb (ftp)(http) NDF
GPL13787_090130_HG18_Decipher_opt.pos.gz 6.7 Mb (ftp)(http) POS
GPL13787_090130_HG18_Decipher_opt_HX3.ncd.gz 267 b (ftp)(http) NCD

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