GEO help: Mouse over screen elements for information.
Status
Public on Jun 30, 2011
Title
Agilent-026441 Gallus gallus (Chicken) Oligo Microarray v2 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Gallus gallus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
G. gallus (Chicken) Oligo Microarray v2 Arrays of this design have barcodes that begin with 16026441 or 2526441. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL15357.
Submission date
Jun 30, 2011
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (156)
GSM836210 , GSM836211 , GSM836212 , GSM836213 , GSM836214 , GSM836215
GSM836216 ,
GSM836217 ,
GSM836218 ,
GSM836219 ,
GSM836220 ,
GSM836221 ,
GSM917795 ,
GSM917796 ,
GSM917797 ,
GSM917798 ,
GSM917799 ,
GSM917800 ,
GSM917801 ,
GSM917802 ,
GSM917803 ,
GSM917804 ,
GSM917805 ,
GSM917806 ,
GSM1348969 ,
GSM1350417 ,
GSM1350418 ,
GSM1350419 ,
GSM1350420 ,
GSM1350421 ,
GSM1350422 ,
GSM1350423 ,
GSM1362933 ,
GSM1362934 ,
GSM1362935 ,
GSM1362936 ,
GSM1362937 ,
GSM1362938 ,
GSM1362939 ,
GSM1362940 ,
GSM1362941 ,
GSM1362942 ,
GSM1591574 ,
GSM1591575 ,
GSM1591576 ,
GSM1591577 ,
GSM1591578 ,
GSM1591579 ,
GSM1591580 ,
GSM1591581 ,
GSM1591582 ,
GSM1591583 ,
GSM1591584 ,
GSM1591585 ,
GSM1595939 ,
GSM1595940 ,
GSM1595941 ,
GSM1595942 ,
GSM1595943 ,
GSM1595944 ,
GSM1595945 ,
GSM1595946 ,
GSM1595947 ,
GSM1595948 ,
GSM1595949 ,
GSM1595950 ,
GSM1595951 ,
GSM1595952 ,
GSM1595953 ,
GSM1595954 ,
GSM1595955 ,
GSM1595956 ,
GSM1595957 ,
GSM1595958 ,
GSM1595959 ,
GSM1595960 ,
GSM1595961 ,
GSM1595962 ,
GSM1718033 ,
GSM1718034 ,
GSM1718035 ,
GSM1718036 ,
GSM1718037 ,
GSM2247136 ,
GSM2247137 ,
GSM2298878 ,
GSM2298879 ,
GSM2298880 ,
GSM2298881 ,
GSM2544840 ,
GSM2544841 ,
GSM2544842 ,
GSM2544843 ,
GSM2544844 ,
GSM2544845 ,
GSM2544846 ,
GSM2544847 ,
GSM2544848 ,
GSM2544849 ,
GSM2544850 ,
GSM2544851 ,
GSM2544852 ,
GSM2544853 ,
GSM2544854 ,
GSM2544855 ,
GSM2544856 ,
GSM2544857 ,
GSM2544858 ,
GSM2544859 ,
GSM2544860 ,
GSM2544861 ,
GSM2544862 ,
GSM2544863 ,
GSM2544864 ,
GSM2544865 ,
GSM2544866 ,
GSM2544867 ,
GSM2544868 ,
GSM2544869 ,
GSM2544870 ,
GSM2544871 ,
GSM2544872 ,
GSM2544873 ,
GSM2544874 ,
GSM2544875 ,
GSM2695410 ,
GSM2695411 ,
GSM2695412 ,
GSM2695413 ,
GSM2695414 ,
GSM2695415 ,
GSM2695494 ,
GSM2695495 ,
GSM2695496 ,
GSM2695497 ,
GSM2695498 ,
GSM2695499 ,
GSM3018534 ,
GSM3018535 ,
GSM3018536 ,
GSM3018537 ,
GSM3018538 ,
GSM3018539 ,
GSM3018540 ,
GSM3018541 ,
GSM3018542 ,
GSM3018543 ,
GSM3018544 ,
GSM3018545 ,
GSM3018546 ,
GSM3018547 ,
GSM3018548 ,
GSM3018549 ,
GSM7054129 ,
GSM7054130 ,
GSM7054131
Series (16)
GSE33813
Chicken erythrocytes stimulated with LPS, PGN and Poly(I:C)
GSE37400
Transcriptome responses to heat stress in hypothalamus of a meat-type chicken
GSE56014
Layers infected by Salmonella Enteritidis
GSE56506
Study of PB1-F2 functions in avian host.
GSE65279
Acute heat stress induces differential gene expressions in the testes of a broiler-type strain of Taiwan country chickens
GSE65426
Bid Expression Controls Neuronal Cell Fate During Avian Ciliary Ganglion Development
GSE70182
Genetic complementation analysis revealed distinct contributions of the N-terminal tail of H2A.Z to epigenetic regulations
GSE84647
A cancer-associated mutation in H2A.Z decreases nucleosome stability and impairs mitotic progression
GSE86233
Effect of Notch signal inhibition on chicken neural retina in spreading culture
GSE96837
Chicken brain and lung gene expression profiles following infection with two recombinant H5N3 avian influenza viruses - rH5N3 Ori (P0) and rH5N3 P6
GSE100868
Omics analysis of transgenic chickens compared with non-transgenic chickens [gender]
GSE100879
Omics analysis of transgenic chickens compared with non-transgenic chickens [genotypes]
GSE100880
Omics analysis of transgenic chickens compared with non-transgenic chickens
GSE110904
Gene expression in chicken embryo liver
GSE110906
Genotoxicity of nitrosamines
GSE225680
Effect of modified H2A.Z protein to gene expression in DT40 cells.
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
REFSEQ
RefSeqAccession
GB_ACC
GenBank Accession number
LOCUSLINK_ID
LocuslinkID
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
UNIGENE_ID
UnigeneID
ENSEMBL_ID
EnsemblID
TIGR_ID
TIGRID
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
GO_ID
GoIDs
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
REFSEQ
GB_ACC
LOCUSLINK_ID
GENE_SYMBOL
GENE_NAME
UNIGENE_ID
ENSEMBL_ID
TIGR_ID
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GO_ID
SEQUENCE
1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
A_87_P024536
A_87_P024536
FALSE
BX929904
420552
LOC420552
hypothetical gene supported by BX929555; BX929904
Gga.11246
ENSGALT00000038153
ens|ENSGALT00000038153|gb|BX929904|gb|BX929555|gb|XM_429771
chr2:22584170-22584229
Gallus gallus finished cDNA, clone ChEST655o24. [BX929904]
AGCAAAACTTAAATAGCACCTGATTCAGTACTTGCAGTCTTCTGATTAAAATATGCAGTC
13
266
146
A_87_P176698
A_87_P176698
FALSE
XM_001235222
XM_001235222
tc|TC334882|ref|XM_001235222
chr2:94675921-94675980
PREDICTED: Gallus gallus hypothetical protein LOC772021 (LOC772021), mRNA [XM_001235222]
CTTCCAAGAACAATAACTGTTGTTATTCTGCATCTTTTTGAAGGCTGTTACAAAGAGCAG
14
266
144
A_87_P133003
A_87_P133003
FALSE
AM773267
Gga.47240
gb|AM773267|tc|NP12999179
unmapped
Gallus gallus partial mRNA for immunoglobulin heavy chain variable region (IGVH gene), clone Ro52_R2E5. [AM773267]
AGTGCTTATGGTGATCCTGGCTGTTATTTTTGTGTTGATGATATCGACACATGGGGCCAC
15
266
142
A_87_P011913
A_87_P011913
FALSE
CR523001
420374
ZNF777
zinc finger protein 777
Gga.13273
ENSGALT00000007889
ens|ENSGALT00000007889|gb|CR523001|gb|CR352782|gb|AJ720969
chr2:470585-470644
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZI15] [ENSGALT00000007889]
ACGGCGCATCAGGGTCCACCTGGACTATGAGGCTGGGCAAGTAACCTTCTACAACACTGA
16
266
140
A_87_P035596
A_87_P035596
FALSE
NM_204542
NM_204542
395221
NR1H3
nuclear receptor subfamily 1, group H, member 3
Gga.4130
ENSGALT00000013356
ref|NM_204542|ens|ENSGALT00000013356|gb|AJ851708|tc|TC303923
chr5:25261828-25261769
Gallus gallus nuclear receptor subfamily 1, group H, member 3 (NR1H3), mRNA [NM_204542]
GO:0000790(nuclear chromatin)|GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0003707(steroid hormone receptor activity)|GO:0005634(nucleus)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0010552(positive regulation of gene-specific transcription from RNA polymerase II promoter)|GO:0010867(positive regulation of triglyceride biosynthetic process)|GO:0010870(positive regulation of receptor biosynthetic process)|GO:0010875(positive regulation of cholesterol efflux)|GO:0010887(negative regulation of cholesterol storage)|GO:0030528(transcription regulator activity)|GO:0032270(positive regulation of cellular protein metabolic process)|GO:0032369(negative regulation of lipid transport)|GO:0032570(response to progesterone stimulus)|GO:0032810(sterol response element binding)|GO:0034145(positive regulation of toll-like receptor 4 signaling pathway)|GO:0035326(enhancer binding)|GO:0042632(cholesterol homeostasis)|GO:0043277(apoptotic cell clearance)|GO:0043565(sequence-specific DNA binding)|GO:0044255(cellular lipid metabolic process)|GO:0045723(positive regulation of fatty acid biosynthetic process)|GO:0045861(negative regulation of proteolysis)|GO:0046872(metal ion binding)|GO:0048550(negative regulation of pinocytosis)|GO:0051006(positive regulation of lipoprotein lipase activity)|GO:0070328(triglyceride homeostasis)|GO:0071222(cellular response to lipopolysaccharide)|GO:0090188(negative regulation of pancreatic juice secretion)
CCTTGCCACTGGCCTTCACTCTGCACCTTTGTAAAGCACTTGTAACAATCCGTAAAATAA
17
266
138
A_87_P024313
A_87_P024313
FALSE
NM_001044641
NM_001044641
419352
PARD6B
par-6 partitioning defective 6 homolog beta (C. elegans)
Gga.12576
ENSGALT00000012978
ref|NM_001044641|ens|ENSGALT00000012978|gb|BX930407|gb|BX932654
chr20:13529086-13529027
Gallus gallus par-6 partitioning defective 6 homolog beta (C. elegans) (PARD6B), mRNA [NM_001044641]
GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0005923(tight junction)|GO:0005938(cell cortex)|GO:0006461(protein complex assembly)|GO:0045177(apical part of cell)
CTGCTGCCCATAAATAATGATGACAATTATCATAAAGCAGTTTCCACTGCCAATCCCCTA
18
266
136
A_87_P002891
A_87_P002891
FALSE
XM_418263
420147
EPS15L1
epidermal growth factor receptor pathway substrate 15-like 1
Gga.18726
ENSGALT00000006230
ens|ENSGALT00000006230|tc|TC348353
chr28:3915705-3915764
Rep: Epidermal growth factor receptor substrate 15-like 1 (Eps15-related protein) (Eps15R). - Gallus gallus, partial (35%) [TC348353]
GO:0005509(calcium ion binding)
GATCCCTTTGGAAGTGGCGCTTTCAGTAGTAGTGAAGGATTTGCAGATTTCAGTCAGATG
19
266
134
A_87_P095711
A_87_P095711
FALSE
CR353222
422667
BBS12
Bardet-Biedl syndrome 12
Gga.17040
ENSGALT00000019318
ens|ENSGALT00000019318|gb|CR353222|gb|XM_420621|tc|TC308914
chr4:55167021-55166962
Gallus gallus finished cDNA, clone ChEST45a6. [CR353222]
ATAGGTCCCAGAAGGAGTCAGCTATTAAACTCACGTTCATCGAGTGAATTTATGTTTTTG
20
266
132
A_87_P023818
A_87_P023818
FALSE
BX931696
Gga.18572
ENSGALT00000040398
ens|ENSGALT00000040398|ens|ENSGALT00000001967|gb|BX931696|ens|ENSGALT00000040395
chr21:1848651-1849441
chromosome 1 open reading frame 222 [Source:HGNC Symbol;Acc:27917] [ENSGALT00000040398]
CTCAGTGACATCGCCAAAGAAAAGGAACTTGTGGTCCAGAAAATCAGAGATGAGCTGACT
Total number of rows: 45220 Table truncated, full table size 17400 Kbytes .
Supplementary data files not provided