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Status
Public on Jun 30, 2011
Title
Agilent-026441 Gallus gallus (Chicken) Oligo Microarray v2 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Gallus gallus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
G. gallus (Chicken) Oligo Microarray v2
Submission date
Jun 30, 2011
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (156)
GSM836210 , GSM836211 , GSM836212 , GSM836213 , GSM836214 , GSM836215
GSM836216 ,
GSM836217 ,
GSM836218 ,
GSM836219 ,
GSM836220 ,
GSM836221 ,
GSM917795 ,
GSM917796 ,
GSM917797 ,
GSM917798 ,
GSM917799 ,
GSM917800 ,
GSM917801 ,
GSM917802 ,
GSM917803 ,
GSM917804 ,
GSM917805 ,
GSM917806 ,
GSM1348969 ,
GSM1350417 ,
GSM1350418 ,
GSM1350419 ,
GSM1350420 ,
GSM1350421 ,
GSM1350422 ,
GSM1350423 ,
GSM1362933 ,
GSM1362934 ,
GSM1362935 ,
GSM1362936 ,
GSM1362937 ,
GSM1362938 ,
GSM1362939 ,
GSM1362940 ,
GSM1362941 ,
GSM1362942 ,
GSM1591574 ,
GSM1591575 ,
GSM1591576 ,
GSM1591577 ,
GSM1591578 ,
GSM1591579 ,
GSM1591580 ,
GSM1591581 ,
GSM1591582 ,
GSM1591583 ,
GSM1591584 ,
GSM1591585 ,
GSM1595939 ,
GSM1595940 ,
GSM1595941 ,
GSM1595942 ,
GSM1595943 ,
GSM1595944 ,
GSM1595945 ,
GSM1595946 ,
GSM1595947 ,
GSM1595948 ,
GSM1595949 ,
GSM1595950 ,
GSM1595951 ,
GSM1595952 ,
GSM1595953 ,
GSM1595954 ,
GSM1595955 ,
GSM1595956 ,
GSM1595957 ,
GSM1595958 ,
GSM1595959 ,
GSM1595960 ,
GSM1595961 ,
GSM1595962 ,
GSM1718033 ,
GSM1718034 ,
GSM1718035 ,
GSM1718036 ,
GSM1718037 ,
GSM2247136 ,
GSM2247137 ,
GSM2298878 ,
GSM2298879 ,
GSM2298880 ,
GSM2298881 ,
GSM2544840 ,
GSM2544841 ,
GSM2544842 ,
GSM2544843 ,
GSM2544844 ,
GSM2544845 ,
GSM2544846 ,
GSM2544847 ,
GSM2544848 ,
GSM2544849 ,
GSM2544850 ,
GSM2544851 ,
GSM2544852 ,
GSM2544853 ,
GSM2544854 ,
GSM2544855 ,
GSM2544856 ,
GSM2544857 ,
GSM2544858 ,
GSM2544859 ,
GSM2544860 ,
GSM2544861 ,
GSM2544862 ,
GSM2544863 ,
GSM2544864 ,
GSM2544865 ,
GSM2544866 ,
GSM2544867 ,
GSM2544868 ,
GSM2544869 ,
GSM2544870 ,
GSM2544871 ,
GSM2544872 ,
GSM2544873 ,
GSM2544874 ,
GSM2544875 ,
GSM2695410 ,
GSM2695411 ,
GSM2695412 ,
GSM2695413 ,
GSM2695414 ,
GSM2695415 ,
GSM2695494 ,
GSM2695495 ,
GSM2695496 ,
GSM2695497 ,
GSM2695498 ,
GSM2695499 ,
GSM3018534 ,
GSM3018535 ,
GSM3018536 ,
GSM3018537 ,
GSM3018538 ,
GSM3018539 ,
GSM3018540 ,
GSM3018541 ,
GSM3018542 ,
GSM3018543 ,
GSM3018544 ,
GSM3018545 ,
GSM3018546 ,
GSM3018547 ,
GSM3018548 ,
GSM3018549 ,
GSM7054129 ,
GSM7054130 ,
GSM7054131 Series (16)
GSE33813 Chicken erythrocytes stimulated with LPS, PGN and Poly(I:C)
GSE37400 Transcriptome responses to heat stress in hypothalamus of a meat-type chicken
GSE56014 Layers infected by Salmonella Enteritidis
GSE56506 Study of PB1-F2 functions in avian host.
GSE65279 Acute heat stress induces differential gene expressions in the testes of a broiler-type strain of Taiwan country chickens
GSE65426 Bid Expression Controls Neuronal Cell Fate During Avian Ciliary Ganglion Development
GSE70182 Genetic complementation analysis revealed distinct contributions of the N-terminal tail of H2A.Z to epigenetic regulations
GSE84647 A cancer-associated mutation in H2A.Z decreases nucleosome stability and impairs mitotic progression
GSE86233 Effect of Notch signal inhibition on chicken neural retina in spreading culture
GSE96837 Chicken brain and lung gene expression profiles following infection with two recombinant H5N3 avian influenza viruses - rH5N3 Ori (P0) and rH5N3 P6
GSE100868 Omics analysis of transgenic chickens compared with non-transgenic chickens [gender]
GSE100879 Omics analysis of transgenic chickens compared with non-transgenic chickens [genotypes]
GSE100880 Omics analysis of transgenic chickens compared with non-transgenic chickens
GSE110904 Gene expression in chicken embryo liver
GSE110906 Genotoxicity of nitrosamines
GSE225680 Effect of modified H2A.Z protein to gene expression in DT40 cells.
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
A_87_P024536
A_87_P024536
FALSE
BX929904 420552
LOC420552
hypothetical gene supported by BX929555; BX929904
Gga.11246
ENSGALT00000038153
ens|ENSGALT00000038153|gb|BX929904|gb|BX929555|gb|XM_429771
chr2:22584170-22584229
Gallus gallus finished cDNA, clone ChEST655o24. [BX929904]
AGCAAAACTTAAATAGCACCTGATTCAGTACTTGCAGTCTTCTGATTAAAATATGCAGTC
13
266
146
A_87_P176698
A_87_P176698
FALSE
XM_001235222
XM_001235222 tc|TC334882|ref|XM_001235222
chr2:94675921-94675980
PREDICTED: Gallus gallus hypothetical protein LOC772021 (LOC772021), mRNA [XM_001235222]
CTTCCAAGAACAATAACTGTTGTTATTCTGCATCTTTTTGAAGGCTGTTACAAAGAGCAG
14
266
144
A_87_P133003
A_87_P133003
FALSE
AM773267 Gga.47240
gb|AM773267|tc|NP12999179
unmapped
Gallus gallus partial mRNA for immunoglobulin heavy chain variable region (IGVH gene), clone Ro52_R2E5. [AM773267]
AGTGCTTATGGTGATCCTGGCTGTTATTTTTGTGTTGATGATATCGACACATGGGGCCAC
15
266
142
A_87_P011913
A_87_P011913
FALSE
CR523001 420374
ZNF777
zinc finger protein 777
Gga.13273
ENSGALT00000007889
ens|ENSGALT00000007889|gb|CR523001|gb|CR352782|gb|AJ720969
chr2:470585-470644
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZI15] [ENSGALT00000007889]
ACGGCGCATCAGGGTCCACCTGGACTATGAGGCTGGGCAAGTAACCTTCTACAACACTGA
16
266
140
A_87_P035596
A_87_P035596
FALSE
NM_204542
NM_204542 395221
NR1H3
nuclear receptor subfamily 1, group H, member 3
Gga.4130
ENSGALT00000013356
ref|NM_204542|ens|ENSGALT00000013356|gb|AJ851708|tc|TC303923
chr5:25261828-25261769
Gallus gallus nuclear receptor subfamily 1, group H, member 3 (NR1H3), mRNA [NM_204542]
GO:0000790(nuclear chromatin)|GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0003707(steroid hormone receptor activity)|GO:0005634(nucleus)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0010552(positive regulation of gene-specific transcription from RNA polymerase II promoter)|GO:0010867(positive regulation of triglyceride biosynthetic process)|GO:0010870(positive regulation of receptor biosynthetic process)|GO:0010875(positive regulation of cholesterol efflux)|GO:0010887(negative regulation of cholesterol storage)|GO:0030528(transcription regulator activity)|GO:0032270(positive regulation of cellular protein metabolic process)|GO:0032369(negative regulation of lipid transport)|GO:0032570(response to progesterone stimulus)|GO:0032810(sterol response element binding)|GO:0034145(positive regulation of toll-like receptor 4 signaling pathway)|GO:0035326(enhancer binding)|GO:0042632(cholesterol homeostasis)|GO:0043277(apoptotic cell clearance)|GO:0043565(sequence-specific DNA binding)|GO:0044255(cellular lipid metabolic process)|GO:0045723(positive regulation of fatty acid biosynthetic process)|GO:0045861(negative regulation of proteolysis)|GO:0046872(metal ion binding)|GO:0048550(negative regulation of pinocytosis)|GO:0051006(positive regulation of lipoprotein lipase activity)|GO:0070328(triglyceride homeostasis)|GO:0071222(cellular response to lipopolysaccharide)|GO:0090188(negative regulation of pancreatic juice secretion)
CCTTGCCACTGGCCTTCACTCTGCACCTTTGTAAAGCACTTGTAACAATCCGTAAAATAA
17
266
138
A_87_P024313
A_87_P024313
FALSE
NM_001044641
NM_001044641 419352
PARD6B
par-6 partitioning defective 6 homolog beta (C. elegans)
Gga.12576
ENSGALT00000012978
ref|NM_001044641|ens|ENSGALT00000012978|gb|BX930407|gb|BX932654
chr20:13529086-13529027
Gallus gallus par-6 partitioning defective 6 homolog beta (C. elegans) (PARD6B), mRNA [NM_001044641]
GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0005923(tight junction)|GO:0005938(cell cortex)|GO:0006461(protein complex assembly)|GO:0045177(apical part of cell)
CTGCTGCCCATAAATAATGATGACAATTATCATAAAGCAGTTTCCACTGCCAATCCCCTA
18
266
136
A_87_P002891
A_87_P002891
FALSE
XM_418263 420147
EPS15L1
epidermal growth factor receptor pathway substrate 15-like 1
Gga.18726
ENSGALT00000006230
ens|ENSGALT00000006230|tc|TC348353
chr28:3915705-3915764
Rep: Epidermal growth factor receptor substrate 15-like 1 (Eps15-related protein) (Eps15R). - Gallus gallus, partial (35%) [TC348353]
GO:0005509(calcium ion binding)
GATCCCTTTGGAAGTGGCGCTTTCAGTAGTAGTGAAGGATTTGCAGATTTCAGTCAGATG
19
266
134
A_87_P095711
A_87_P095711
FALSE
CR353222 422667
BBS12
Bardet-Biedl syndrome 12
Gga.17040
ENSGALT00000019318
ens|ENSGALT00000019318|gb|CR353222|gb|XM_420621|tc|TC308914
chr4:55167021-55166962
Gallus gallus finished cDNA, clone ChEST45a6. [CR353222]
ATAGGTCCCAGAAGGAGTCAGCTATTAAACTCACGTTCATCGAGTGAATTTATGTTTTTG
20
266
132
A_87_P023818
A_87_P023818
FALSE
BX931696 Gga.18572
ENSGALT00000040398
ens|ENSGALT00000040398|ens|ENSGALT00000001967|gb|BX931696|ens|ENSGALT00000040395
chr21:1848651-1849441
chromosome 1 open reading frame 222 [Source:HGNC Symbol;Acc:27917] [ENSGALT00000040398]
CTCAGTGACATCGCCAAAGAAAAGGAACTTGTGGTCCAGAAAATCAGAGATGAGCTGACT
45220 17400 Kbytes .Supplementary data files not provided
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