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Platform GPL13795 Query DataSets for GPL13795
Status Public on Sep 01, 2011
Title Agilent-023443 Equine Central Nervous System and Splenic Transcriptome Microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Equus caballus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16023443 or 2523443.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 30, 2011
Last update date Sep 01, 2011
Contact name Melissa Bourgeois
Organization name University of Florida
Street address 2015 SW 16th Ave
City Gainesville
State/province FL
ZIP/Postal code 32608
Country USA
 
Samples (36) GSM752513, GSM752514, GSM752515, GSM752516, GSM752517, GSM752518 
Series (1)
GSE30347 Gene Expression Analysis in the Thalamus and Cerebrum of Horses Experimentally Infected with West Nile Virus

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 UF_Eca_AF_218248 UF_Eca_AF_218248 FALSE ENSECAT00000025103___1_nrnt unmapped TAGCAGCCATGAAATTTGCCCACACACAAATACAGACCTACCTATACATACACATGTGCA
13 266 146 UF_Eca_IP_201617 UF_Eca_IP_201617 FALSE HorseWN.sd.8635.C1___1rc_nrnt unmapped ATAGAGCATGAATTTTACTCATCTTCCCTGGCGACATTTTTCCCTCCCATCTGTGATTCC
14 266 144 UF_Eca_UN_234448 UF_Eca_UN_234448 FALSE HorseWN.1890.C1___0rc unmapped TCAATCCCATTAAAATCACACCTCACCTACACCAATTACTTTCTATTGCTTGGAAAACAT
15 266 142 UF_Eca_AF_206635 UF_Eca_AF_206635 FALSE HorseWN.2721.C1___1rc_nr0nt1 unmapped CCATGCTTTTCTCTTTTCAAGAAAATTGAAAAACAAATCAACAACTCTAGTACCCCCAAC
16 266 140 UF_Eca_AF_213572 UF_Eca_AF_213572 FALSE ENSECAT00000004449___1_nrnt unmapped GTTTCTTTTATAGAAGCATAAAGAGTTTTGTGGAACAGTAGCCATTTTAGTTACTGGGGG
17 266 138 UF_Eca_UN_235278 UF_Eca_UN_235278 FALSE HorseWN.1719.C1___0rc unmapped TCTAAAATCCAGCCACTGCTGGAAACCCAATTGATTCAGAGCTTGGATGTAAAACGCCCA
18 266 136 UF_Eca_AF_225062 UF_Eca_AF_225062 FALSE HorseWN.6143.C1___1rc_nr0nt1 unmapped TGAGGTGCTAATTTTGTGTGAGATGAGCTTTGTAAACTACCTTGGGAAAGGTCCTTTGGT
19 266 134 UF_Eca_AF_210624 UF_Eca_AF_210624 FALSE HorseWN.609.C1___1_nr0nt1 unmapped AGGTCTAAATGTAATGATTGGTTTATTGTTCTACAACCCCAATCCATCATTTTCCGTGTA
20 266 132 UF_Eca_RG_238431 UF_Eca_RG_238431 FALSE ENSECAT00000009633 unmapped ATTATGCTTCTTCAAAAGAACGAGCATCCCGTCACAGACGGACCATGTCTGATGGAAATG

Total number of rows: 45220

Table truncated, full table size 6388 Kbytes.




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Supplementary data files not provided
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