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Platform GPL13813 Query DataSets for GPL13813
Status Public on Jul 05, 2011
Title Agilent-020166 Candida albicans 8 x 15k Custom Expression Array v2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Candida albicans
Manufacturer Agilent
Manufacture protocol Arrays were custom designed Agilent 8*15k Microarrays [AMADID #020166] containing a minimum of 2 independent probes for each ORF. Probes were 60bp, designed with the Agilent Probe design tool set to Best Distribution. For ORFs whose 2 probes had a history of divergent results in previous designed, 3 additional probes were added [for a total of 5 per ORF]. See manufacturer's website for more details.
Catalog number 8 x 15k Agilent ID020166 Expression Array v2
Support glass
Coating polysine
 
Description A unique iron homeostasis regulatory circuit with reciprocal roles in Candida albicans commensalism and pathogenesis.
Suzanne Noble lab --- Candida albicans - 8 x 15k Agilent ID020166 Expression Array v2
Genome version: Assembly 19; 24-Aug-2009; http://www.candidagenome.org/download/sequence/
60-mer oligonucleotides.
 
Web link http://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-2705
Contributor(s) Chen C, Pande K, French SD, Tuch BB, Noble S
Submission date Jul 01, 2011
Last update date Jul 05, 2011
Contact name Changbin Chen
E-mail(s) Changbin.Chen@ucsf.edu
Phone 4154768992
Fax 4154768201
Organization name University of California, San Francisco
Department Department of Microbiology & Immunology
Lab Dr. Suzanne Noble LAB
Street address HSE450, 513 Parnassus Avenue
City San Francisco
State/province California
ZIP/Postal code 94143
Country USA
 
Samples (30) GSM758862, GSM758863, GSM758864, GSM758865, GSM758866, GSM758867 
Series (4)
GSE30590 A unique iron homeostasis regulatory circuit with reciprocal roles in Candida albicans commensalism and pathogenesis [Expression Array]
GSE30593 A unique iron homeostasis regulatory circuit with reciprocal roles in Candida albicans commensalism and pathogenesis
GSE160781 Gene Expression Arrays comparing C. albicans CEM175 during planktonic and biofilm growth in different media

Data table header descriptions
ID
Block Column Block position (Vertical)
Block Row Block position (Horizontal)
Column Probe position (Vertical)
Row Probe position (Horizontal)
Reporter Name Internal name of each probe assigned by Agilent
Comment[AEReporterName] Comment of internal name of each probe assigned by Agilent
Reporter Database Entry[chromosome_coordinate:cgd] Chromosome coordinate of each probe
SEQUENCE Reporter (Probe) sequence
Reporter Group[role] Feature of each probe
Control Type Control type
Composite Element Name Gene name defined by CGD database
Comment[AECompositeName] Comment of gene name defined by CGD database
Composite Element Comment Gene annotation
ORF Locus tag
SPOT_ID controls

Data table
ID Block Column Block Row Column Row Reporter Name Comment[AEReporterName] Reporter Database Entry[chromosome_coordinate:cgd] SEQUENCE Reporter Group[role] Control Type Composite Element Name Comment[AECompositeName] Composite Element Comment ORF SPOT_ID
1 1 1 96 164 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
2 1 1 96 4 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
3 1 1 96 2 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
4 1 1 96 163 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
5 1 1 96 1 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
6 1 1 2 164 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
7 1 1 2 3 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
8 1 1 2 1 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
9 1 1 1 164 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
10 1 1 1 2 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
11 1 1 1 163 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
12 1 1 1 161 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
13 1 1 1 3 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
14 1 1 1 1 GE_BrightCorner GE_BrightCorner Control control_label GE_BrightCorner GE_BrightCorner Control
15 1 1 96 162 DarkCorner DarkCorner Control control_label DarkCorner DarkCorner Control
16 1 1 96 160 DarkCorner DarkCorner Control control_label DarkCorner DarkCorner Control
17 1 1 96 6 DarkCorner DarkCorner Control control_label DarkCorner DarkCorner Control
18 1 1 96 161 DarkCorner DarkCorner Control control_label DarkCorner DarkCorner Control
19 1 1 96 5 DarkCorner DarkCorner Control control_label DarkCorner DarkCorner Control
20 1 1 96 3 DarkCorner DarkCorner Control control_label DarkCorner DarkCorner Control

Total number of rows: 15744

Table truncated, full table size 2657 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13813_020128_D_20080428_Single_block.txt.gz 630.3 Kb (ftp)(http) TXT
GPL13813_CGD_Chromosomes.txt.gz 489.7 Kb (ftp)(http) TXT

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