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Platform GPL13826 Query DataSets for GPL13826
Status Public on Jul 09, 2011
Title LMGFM E. faecalis V583 oligo 3.6K v.2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Enterococcus faecalis V583
Manufacturer Margrete Solheim (margrete.solheim@umb.no)
Manufacture protocol Oligos representing 3219 chromosomal E. faecalis V583 ORFs + 10 MMH594 PAI ORFs spotted in 24 subarrays. Stratagene SpotReport ALien Oligo report system included for validation.
- spotted_ss_oligo_features
 
 
Contributor(s) Solheim M
Submission date Jul 06, 2011
Last update date Jul 09, 2011
Contact name Anne de Jong
E-mail(s) anne.de.jong@rug.nl
Phone +31 50 363 2047
Organization name university of Groningen
Department Molecular Genetics
Street address Nijenborgh 7
City Groningen
ZIP/Postal code 9747 AG
Country Netherlands
 
Samples (10) GSM767332, GSM767333, GSM767334, GSM767335, GSM767336, GSM767337 
Series (4)
GSE30947 E. faecalis transcriptional responses to zinc stress
GSE30948 E. faecalis transcriptional responses to manganese stress
GSE30949 E. faecalis transcriptional responses to copper stress

Data table header descriptions
ID
SEQUENCE oligo sequence
ORF ncbi locus tag
ORF gene name
FUNCTION function
ENTREZ_GENE_ID Gene ID
SPOT_ID

Data table
ID SEQUENCE ORF ORF FUNCTION ENTREZ_GENE_ID SPOT_ID
EF0001 TTGATGCATGCTATTGGTCATCAAATGTTAGTGAATCAACCAGATGCCAAAGTCAAATATGTTAGTAGCG EF0001 dnaA chromosomal replication initiation protein 1198912
EF0002 ACAGGTGTTAAAATTGTGTTATCAGAAGATGGCTTATCACTTACTGGGAGTAACGCGGATATTTCAATTG EF0002 dnaN DNA polymerase III, beta subunit 1198913
EF0003 ATGGTATTTGGCAGATAATAGCGTGTTTGTTGATGGCGAGTTGGAAAATCGTCGCGGACGGAAACTTTAT EF0003 hypothetical protein 1198914
EF0004 TTAATTTCCAACAAAGGACGTAAAACCAAGGTTAATCACATTGAGCAAAAAAGGCTCAGTGCGTACATTG EF0004 recF recombination protein F 1198915
EF0005 CAATTGAAGACCGTCGTGAAGGACAAGAAGATAAAAAAGAGTATCACTATGAAGGCGGGATTAAGAGTTA EF0005 gyrB DNA gyrase subunit B 1198916
EF0006 AACAAGTTTATTGATGGACAATCCTGATGTAACGACGAATGAATTGATGGAAGTGTTACCTGGACCAGAT EF0006 gyrA DNA gyrase, A subunit 1198917
EF0007 TCATATCGTTAATGTTACTTCTCCATCAACAGCTGGCGCAATCAACGAGTTTGATCGTTTAGCAAAAATC EF0007 rpsF 30S ribosomal protein S6 1198918
EF0008 TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAAT EF0008 ssb-1 single-strand binding protein 1198919
EF0009 GTAAACGTCGGAAAGTCGACTATATCGCAGCAAACCACATCGAATACATCGACTATAAAGATACTGAATT EF0009 rpsR 30S ribosomal protein S18 1198920
EF0011 AGTGGTTATTCGGCTGTTGATTAGAGATGTAGAAATTACGAACGTAGAAAAGATTCAAGAAGCAAGTTCC EF0011 DHH family protein 1198921
EF0012 GTTAGCGGGTCAAAAGAAAGCCCAAGAAAAACATGAAGCAGAAGTTTTAGCACAAGCAAAAGAAATGCAA EF0012 rplI 50S ribosomal protein L9 1198922
EF0013 GATGTGGTAACAATCAAAGATCGCCTAGAACAAGAGAATTTGTTAGAAGATGTTGGTGGACTAAGTTATC EF0013 dnaB replicative DNA helicase 1198923
EF0014 ATGTCATCAGTAGTAGTTGTTGGAACGCAATGGGGCGATGAAGGTAAAGGAAAAATTACAGACTTTCTAA EF0014 purA adenylosuccinate synthetase 1198924
EF0016 TTTTGTGGAGCAAGGGTTACCGGTGATTTATTTAGCTTTTTCATCTGGGTTAAGTGGCTCTTATCAAAGT EF0016 DegV family protein 1198925
EF0017 TGGTTGGAATCAAGCCAACTAGCGACAAAATTGCAAGCACAATCTAATGCCAAAAAAGAAGAACAAATCA EF0017 ABC transporter ATP-binding protein 1198926
EF0018 GTTTCAGCATCGACCATTAACCAAGCCAGTTAAAAGTTATCGGGAAAAATCAATGGATCACTCCACAAAA EF0018 sigma-54 factor interaction domain-containing protein 1198927
EF0019 ATTCATGGCCAAGTAGCAACTGTTTGGGCAAAATTGACGAACATTAATCGCATTTTAGTGGTTAGTGATT EF0019 PTS system, IIB component 1198928
EF0020 TTTGACAATCAAGACGAAGTACTATTTTTAGTTGACCTATGGGGAGGAACACCATTTAACCAAGCGAACT EF0020 PTS system, mannose-specific IIAB components 1198929
EF0021 TCAATTATTTTAGTTTTACTCGTTGCCTTTCTAGCTGGTATGGAAGGGATTTTGGATGAGTTCCAATTCC EF0021 PTS system, mannose-specific IIC component 1198930
EF0022 TGGTAACATCTTAGGCCCAATCTTATTCTTCGTTGCTTGGAACTTAATTCGTTGGTCATTCATGTGGTAT EF0022 PTS system, mannose-specific IID component 1198931

Total number of rows: 3229

Table truncated, full table size 385 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13826_A_MEXP_1069.txt.gz 261.5 Kb (ftp)(http) TXT

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