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Platform GPL13838 Query DataSets for GPL13838
Status Public on Jul 08, 2011
Title [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [CDF: Brainarray TAIRG, Version 12.1.0]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description This is identical to GPL198 but a custom CDF environment was used to extract data [Brainarray TAIRG, Version 12.1.0].

CDF and other files can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/12.1.0/tairg.asp
 
Submission date Jul 08, 2011
Last update date Jul 11, 2011
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (113) GSM757819, GSM757820, GSM757821, GSM757822, GSM757823, GSM757824 
Series (3)
GSE30547 Expression data from the Arabidopsis root epidermis
GSE47632 Expression data from the Arabidopsis root epidermis mutants
GSE79287 Correlative Controls of Seeds over Maternal Growth and Senescence in Arabidopsis (expression)
Relations
Alternative to GPL198 (Alternative CDF [official])

Data table header descriptions
ID
Description
ORF Gene name
SPOT_ID controls

Data table
ID Description ORF SPOT_ID
AT1G01010_at Symbols: ANAC001 | ANAC001 (Arabidopsis NAC domain containing protein 1); transcription factor | chr1:3631-5899 FORWARD AT1G01010
AT1G01030_at Symbols: NGA3 | NGA3 (NGATHA3); transcription factor | chr1:11649-13714 REVERSE AT1G01030
AT1G01040_at Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III | chr1:23146-31227 FORWARD AT1G01040
AT1G01050_at Symbols: AtPPa1 | AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1); inorganic diphosphatase | chr1:31170-33153 REVERSE AT1G01050
AT1G01060_at Symbols: LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor | chr1:33666-37840 REVERSE AT1G01060
AT1G01070_at Symbols: | nodulin MtN21 family protein | chr1:38752-40944 REVERSE AT1G01070
AT1G01080_at Symbols: | 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | chr1:45296-47019 REVERSE AT1G01080
AT1G01090_at Symbols: PDH-E1 ALPHA | PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring) | chr1:47485-49286 REVERSE AT1G01090
AT1G01100_at Symbols: | 60S acidic ribosomal protein P1 (RPP1A) | chr1:50090-51108 REVERSE AT1G01100
AT1G01110_at Symbols: IQD18 | IQD18 (IQ-domain 18) | chr1:52869-54685 FORWARD AT1G01110
AT1G01120_at Symbols: KCS1 | KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase/ fatty acid elongase | chr1:57269-59167 REVERSE AT1G01120
AT1G01130_at Symbols: | unknown protein | chr1:61963-63811 REVERSE AT1G01130
AT1G01140_at Symbols: CIPK9, SnRK3.12, PKS6 | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | chr1:64166-67625 REVERSE AT1G01140
AT1G01150_at Symbols: | DNA binding / protein binding / zinc ion binding | chr1:70115-72138 REVERSE AT1G01150
AT1G01160_at Symbols: GIF2 | SSXT protein-related / transcription co-activator-related | chr1:72339-74096 FORWARD AT1G01160
AT1G01170_at Symbols: | ozone-responsive stress-related protein, putative | chr1:73931-74737 REVERSE AT1G01170
AT1G01180_at Symbols: | unknown protein | chr1:75633-77446 FORWARD AT1G01180
AT1G01190_at Symbols: CYP78A8 | CYP78A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | chr1:83045-84864 REVERSE AT1G01190
AT1G01200_at Symbols: ATRABA3, ATRAB-A3 | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3); GTP binding | chr1:86515-88213 REVERSE AT1G01200
AT1G01220_at Symbols: | GHMP kinase-related | chr1:91750-95651 FORWARD AT1G01220

Total number of rows: 21504

Table truncated, full table size 2964 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13838_ATH1121501_At_TAIRG.cdf.gz 5.5 Mb (ftp)(http) CDF
GPL13838_ATH1121501_At_TAIRG.cdf.txt.gz 2.2 Mb (ftp)(http) TXT

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