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| Status |
Public on Jul 08, 2011 |
| Title |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [CDF: Brainarray TAIRG, Version 12.1.0] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Arabidopsis thaliana |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| Description |
This is identical to GPL198 but a custom CDF environment was used to extract data [Brainarray TAIRG, Version 12.1.0].
CDF and other files can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/12.1.0/tairg.asp
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| Submission date |
Jul 08, 2011 |
| Last update date |
Jul 11, 2011 |
| Contact name |
GEO admin |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
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| Organization name |
NCBI/NLM/NIH
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| Street address |
9000 Rockville Pike
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Samples (113)
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GSM757819, GSM757820, GSM757821, GSM757822, GSM757823, GSM757824
GSM757825, GSM757826, GSM757827, GSM757828, GSM757829, GSM757830, GSM757831, GSM757832, GSM757833, GSM757834, GSM757835, GSM757836, GSM757837, GSM757838, GSM757839, GSM757840, GSM757841, GSM757842, GSM757843, GSM757844, GSM757845, GSM757846, GSM757847, GSM757848, GSM757849, GSM757850, GSM757851, GSM757852, GSM757853, GSM757854, GSM757855, GSM757856, GSM757857, GSM757858, GSM757859, GSM757860, GSM757861, GSM757862, GSM757863, GSM757864, GSM757865, GSM757866, GSM757867, GSM757868, GSM757869, GSM757870, GSM757871, GSM757872, GSM757873, GSM757874, GSM757875, GSM757876, GSM757877, GSM757878, GSM757879, GSM757880, GSM757881, GSM757882, GSM757883, GSM757884, GSM757885, GSM757886, GSM757887, GSM757888, GSM757889, GSM757890, GSM757891, GSM757892, GSM757893, GSM1153845, GSM1153846, GSM1153847, GSM1153848, GSM1153849, GSM1153850, GSM1153851, GSM1153852, GSM1153853, GSM1153854, GSM1153855, GSM1153856, GSM1153857, GSM1153858, GSM1153859, GSM1153860, GSM1153861, GSM1153862, GSM1153863, GSM1153864, GSM1153865, GSM1153866, GSM1153867, GSM1153868, GSM2090905, GSM2090906, GSM2090907, GSM2090908, GSM2090909, GSM2090910, GSM2090911, GSM2090912, GSM2090913, GSM2090914, GSM2090915, GSM2090916, GSM2090917, GSM2090918
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| Series (3) |
| GSE30547 |
Expression data from the Arabidopsis root epidermis |
| GSE47632 |
Expression data from the Arabidopsis root epidermis mutants |
| GSE79287 |
Correlative Controls of Seeds over Maternal Growth and Senescence in Arabidopsis (expression) |
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| Relations |
| Alternative to |
GPL198 (Alternative CDF [official]) |
| Data table header descriptions |
| ID |
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| Description |
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| ORF |
Gene name |
| SPOT_ID |
controls |
| Data table |
| ID |
Description |
ORF |
SPOT_ID |
| AT1G01010_at |
Symbols: ANAC001 | ANAC001 (Arabidopsis NAC domain containing protein 1); transcription factor | chr1:3631-5899 FORWARD |
AT1G01010 |
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| AT1G01030_at |
Symbols: NGA3 | NGA3 (NGATHA3); transcription factor | chr1:11649-13714 REVERSE |
AT1G01030 |
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| AT1G01040_at |
Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III | chr1:23146-31227 FORWARD |
AT1G01040 |
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| AT1G01050_at |
Symbols: AtPPa1 | AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1); inorganic diphosphatase | chr1:31170-33153 REVERSE |
AT1G01050 |
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| AT1G01060_at |
Symbols: LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor | chr1:33666-37840 REVERSE |
AT1G01060 |
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| AT1G01070_at |
Symbols: | nodulin MtN21 family protein | chr1:38752-40944 REVERSE |
AT1G01070 |
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| AT1G01080_at |
Symbols: | 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | chr1:45296-47019 REVERSE |
AT1G01080 |
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| AT1G01090_at |
Symbols: PDH-E1 ALPHA | PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring) | chr1:47485-49286 REVERSE |
AT1G01090 |
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| AT1G01100_at |
Symbols: | 60S acidic ribosomal protein P1 (RPP1A) | chr1:50090-51108 REVERSE |
AT1G01100 |
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| AT1G01110_at |
Symbols: IQD18 | IQD18 (IQ-domain 18) | chr1:52869-54685 FORWARD |
AT1G01110 |
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| AT1G01120_at |
Symbols: KCS1 | KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase/ fatty acid elongase | chr1:57269-59167 REVERSE |
AT1G01120 |
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| AT1G01130_at |
Symbols: | unknown protein | chr1:61963-63811 REVERSE |
AT1G01130 |
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| AT1G01140_at |
Symbols: CIPK9, SnRK3.12, PKS6 | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase | chr1:64166-67625 REVERSE |
AT1G01140 |
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| AT1G01150_at |
Symbols: | DNA binding / protein binding / zinc ion binding | chr1:70115-72138 REVERSE |
AT1G01150 |
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| AT1G01160_at |
Symbols: GIF2 | SSXT protein-related / transcription co-activator-related | chr1:72339-74096 FORWARD |
AT1G01160 |
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| AT1G01170_at |
Symbols: | ozone-responsive stress-related protein, putative | chr1:73931-74737 REVERSE |
AT1G01170 |
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| AT1G01180_at |
Symbols: | unknown protein | chr1:75633-77446 FORWARD |
AT1G01180 |
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| AT1G01190_at |
Symbols: CYP78A8 | CYP78A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | chr1:83045-84864 REVERSE |
AT1G01190 |
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| AT1G01200_at |
Symbols: ATRABA3, ATRAB-A3 | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3); GTP binding | chr1:86515-88213 REVERSE |
AT1G01200 |
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| AT1G01220_at |
Symbols: | GHMP kinase-related | chr1:91750-95651 FORWARD |
AT1G01220 |
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Total number of rows: 21504
Table truncated, full table size 2964 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL13838_ATH1121501_At_TAIRG.cdf.gz |
5.5 Mb |
(ftp)(http) |
CDF |
| GPL13838_ATH1121501_At_TAIRG.cdf.txt.gz |
2.2 Mb |
(ftp)(http) |
TXT |
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