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Platform GPL13941 Query DataSets for GPL13941
Status Public on Oct 01, 2011
Title MPIMarburg_Piriformospora_indica_105k_v1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Serendipita indica
Manufacturer Agilent
Manufacture protocol Both catalog and custom microarrays are manufactured using a proprietary non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the full-length oligonucleotide. Precise quantities are reproducibly deposited “on the fly.” This engineering feat is achieved without stopping, to make contact with the slide surface and without introducing surface-contact feature anomalies, resulting in consistent spot uniformity and traceability. In addition, multiple microarrays can be printed simultaneously in a single manufacturing run.
Support glass
Coating unknown
 
 
Submission date Jul 19, 2011
Last update date Oct 01, 2011
Contact name Urs Lahrmann
Organization name Fraunhofer ITEM
Department Project Group Personalized Tumor Therapy
Street address Am Biopark 9
City Regensburg
ZIP/Postal code 93053
Country Germany
 
Samples (14) GSM774868, GSM774869, GSM774870, GSM774871, GSM774872, GSM774873 
Series (1)
GSE31266 Transcriptional profiling of Piriformospora indica colonizing living and dead barley roots

Data table header descriptions
ID
Row row
Col column
Probe_ID Agilent probe name
Gene_ID Gene ID to which the probe refers
CONTROL_TYPE
REFSEQ
RANGE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID

Data table
ID Row Col Probe_ID Gene_ID CONTROL_TYPE REFSEQ RANGE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
1 1 1 GE_BrightCorner GE_BrightCorner pos CONTROL
2 1 2 DarkCorner DarkCorner pos CONTROL
3 1 3 DarkCorner DarkCorner pos CONTROL
4 1 4 CUST_62_PI422897310 PIIN_03008 FALSE PIIN_03008 unmapped AGCAAGCCAATGTGTGTGGAGAGCTACAACGAGTACCCACCACTTGGTCGTTTCGCCGTC
5 1 5 CUST_48911_PI422107241 PIIN_08440 FALSE PIIN_08440 unmapped CAGGATCATAATCCAATTACACAAGAAGAAAGCGAAAAGGATAACGAGAAGATTGCCATC
6 1 6 CUST_4725_PI422107241 PIIN_00811 FALSE PIIN_00811 unmapped CCGAGCAACCTCAACCAACTTGGTTCGCTCGCGGGCAAATTTGGTTTTGGAAAGAAATAG
7 1 7 CUST_10370_PI422107241 PIIN_01782 FALSE PIIN_01782 unmapped AAGTTTAGATGCACGACGAGTGATATCTATGTTTCTCTATGTCCATGGACATTACTCTGA
8 1 8 CUST_64816_PI422107241 PIIN_11470 FALSE PIIN_11470 unmapped TTTACAAGGACCACGGCATCACAGAGACGTCGATGGAGATTGATGTGCTTCCTTATAGTA
9 1 9 CUST_33375_PI422107241 PIIN_05737 FALSE PIIN_05737 unmapped AGAAGAGATCAAAAACTTTCACGGCATTCAGCTCCAGACGAGCGTAGACGAGACAAACTA
10 1 10 CUST_11529_PI422107241 PIIN_01978 FALSE PIIN_01978 unmapped TTGCGTAGCACGCATGATGCAAGAATCTACCATCTTCTTTGTCCTCCTCTCAATTCTTCT
11 1 11 CUST_49278_PI422107241 PIIN_08503 FALSE PIIN_08503 unmapped ACAATCAAGACAATGAATAACCTCGCATGCACCTTATCTGACCGCGGCCAATTAGAAGTG
12 1 12 CUST_813_PI422107241 PIIN_00138 FALSE PIIN_00138 unmapped ACCTAGGGAACTCGAGAATCTGCAACAAGCACTCCACGCCGGACAGGCATTCTTGCAGAG
13 1 13 CUST_32638_PI422107241 PIIN_05609 FALSE PIIN_05609 unmapped TGGGAGGGTCAATCCAAAGTGTTTACGGGCTTCACTCGCTCGATCTGGCCTACAGAATAG
14 1 14 CUST_43016_PI422107241 PIIN_07416 FALSE PIIN_07416 unmapped TTCTATGACAATGTCGTTGGCAACATGGGTGACAGAAACGATTTGGATCTGTGGTGGAAG
15 1 15 CUST_54908_PI422107241 PIIN_09494 FALSE PIIN_09494 unmapped ATAAAAGATTTGAGGTTCGAGATTTGCTTCCACGGCCTCGACGCACAATTCTCTCCATCT
16 1 16 CUST_21058_PI422107241 PIIN_03616 FALSE PIIN_03616 unmapped ATATACTCGCAAGACGCATCAATCCGTTTTATCAGAGCCGACCATTGTATATCCGGACGA
17 1 17 CUST_3493_PI422107241 PIIN_00600 FALSE PIIN_00600 unmapped TACGCGTATTCTCAGCGGAGCGTACAGCGTTGTGCCTCCATTGGTCGTGCAGACTAAGGA
18 1 18 CUST_30244_PI422107241 PIIN_05198 FALSE PIIN_05198 unmapped TTCGCATTTTACTACGAAATGCCACTTGGGTTGCGAATTGCAGAAGAGATGACAGCGAGT
19 1 19 CUST_19706_PI422107241 PIIN_03384 FALSE PIIN_03384 unmapped TCCAAACGCCAGGTGATCGAGGAAGAGCTACTGAACAGGAGCCCGAAACGCGTGAAGAAA
20 1 20 CUST_29035_PI422107241 PIIN_04989 FALSE PIIN_04989 unmapped CTGCTCTATCGTCCTCGTACGAGAGGAAGAAGAAGCGGCATCGATGGAGTTGCAGGCAAC

Total number of rows: 105072

Table truncated, full table size 13948 Kbytes.




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Supplementary data files not provided
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