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Platform GPL14005 Query DataSets for GPL14005
Status Public on Oct 01, 2011
Title AECOM Operon 3.0 34K Mouse Array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer Microarray Facility, Albert Einstein College of Medicine of Yeshiva University
Manufacture protocol The arrays were printed with 31,769 70mer probes Qiagen V3.0 oligo set plus controls.
Each array was composed of 48 blocks, arranged in 4 columns and 12 rows, each block containing 700 spots in a staggered pattern of 28 columns and 25 rows.
The arrays were printed under rigorous clean-room conditions and with quality control at multiple stages.
Support Glass
Coating Aminosilane
 
 
Contributor(s) Massimi A
Citation(s) 17665085
Submission date Aug 01, 2011
Last update date Oct 01, 2011
Contact name Joseph Locker
E-mail(s) joseph.locker@einstein.yu.edu
Phone 718-430-3422
Organization name Albert Einstein College of Medicine
Street address Pathology
City Scarsdale
State/province NY
ZIP/Postal code 10583
Country USA
 
Samples (20) GSM769855, GSM769856, GSM769857, GSM769858, GSM769859, GSM769860 
Series (1)
GSE31087 Liver hyperplasia; Gadd45beta-null mouse (C57Bl/6 background)

Data table header descriptions
ID
Block Block of 700 spots, 48 per array
Column Column, 28 per block
Row Row, 25 per block
Operon ID Operon accession number for each oligonucleotide
GenBank ID
UniGene ID Unigene accession number
Gene Gene name
Symbol Gene symbol16583
SEQUENCE Oligonucleotide sequence
GB_ACC GenBank Accession number
ORF ORF Name

Data table
ID Block Column Row Operon ID GenBank ID UniGene ID Gene Symbol SEQUENCE GB_ACC ORF
1 1 1 1 M2NC000006 NA NA NA ACGCTTAAACCTTACGCCTTCAATCGACGCCGCTCTTACGAGTCGACTCCGAGTCTGGCGCTAGAACAA
2 1 2 1 M300021756 NA NA NA CGGCCGAAAGAGCCAGGGCCACAAGTTCCACCACGCCGTGGTGGTTCCCG
3 1 3 1 M300020724 XM_485375 Mm.348215 PREDICTED: similar to calicin (LOC433701) GCAGAGCGTGGAAATCAACTTACAGAAGATCAAGGCCAACAAGTCGACAACCTCAGTACCTCTGTTGCCC XM_485375
4 1 4 1 M300019694 NM_175384 Mm.33831 Cell division cycle associated 2 (Cdca2) Cdca2 AGTAAAACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAATACAGGGCTTGTGTGGCTGT NM_175384 Cdca2
5 1 5 1 M300018410 NM_016694 Mm.311110 Parkin (Park2) TAAATGTGGAGCACACCCAACCTCAGACAAGGACACGTCGGTAGCTTTGAACCTGATCACCAGCAACAGG NM_016694
6 1 6 1 M300017390 NA NA NA TGTGCACAACAACAGACAGGATATCCACTGCAGGTATTTGAGCAGGTGAATCAGATTGCCATAAGGTCGC
7 1 7 1 M300016359 NM_009094 Mm.66 Ribosomal protein S4 X-linked (Rps4x) ATCTCTCTTCCACGAGGAAAAGGAATCCGCCTCACCATTGCTGAAAGAGACAAGAGGCTTGCGGCCAAAC NM_009094
8 1 8 1 M300015333 AY180177 NA KIS kinase (Kis) gene exons 1 through 8 and complete cds CGGAGGACGCTTATGCTTGAGCCGGGACATGGGCAGGACATGGGGGACAGCCACAATTACCGATGTTCCT AY180177
9 1 9 1 M300014285 NA NA Olfactory receptor 894 pseudogene GACATTTTCCCTCTTCAACTTTCATGCAGTAGTACTTATGTCAATGAGCTTATGAGCTATGTTGTGGTGG
10 1 10 1 M300013355 NM_016861 Mm.5567 PDZ and LIM domain 1 (elfin) (Pdlim1) AACAGCAGGCCCGTGGTTCAGCCTCATCCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGA NM_016861
11 1 11 1 M200014344 NA Mm.45888 RAB15 effector protein (Rep15) Rep15 GGGCTATCCACCCCCTACATTGACTGAAAGTGATCCCTGGGTTAAAACTTGCTAGTGTCCCAGTTACGG Rep15
12 1 12 1 M300011665 XM_129913 Mm.133473 PREDICTED: dedicator of cytokinesis 10 (Dock10) TTTAAGGACAACCAGGGGAACGTGGACAGGGACTCACGGTTTTCACCACT XM_129913
13 1 13 1 M300010591 NM_199446 Mm.237296 Phosphorylase kinase beta (Phkb) CCATGTATGAGATGAATTTTTCTCTCCTTGTTGAAGATATGCTGGGAAACATTGACCAGCCAAAGTATAG NM_199446
14 1 14 1 M300009733 XM_487979 Mm.425373 Vomeronasal 2, receptor 28 (Vmn2r28) Vmn2r28 GTCGCAGATTATCAATGAAAATTTGTGGTGCAGATTGTGGTCCTGGATTCAGAAGATCCCGGAAGGAGAG XM_487979 Vmn2r28
15 1 15 1 M300008839 AB002387 NA Partially similar to : Homo sapiens mRNA for KIAA0389 gene partial cds GACATGGCACTCCGAAGGGAACAAATGGCCAAAGAAATGTCAGAAATTTTGAGTAGAGGTCCTGCGGTGC AB002387
16 1 16 1 M200015997 NM_023292 Mm.276653 Pseudouridine synthase 3 (Pus3) TGGATCGTCCCAAGTGCCAAGGACTGGAATCCCGGATCCGGCATTTTGTGAGTAGAGGCAGAATTGAGC NM_023292
17 1 17 1 M200011733 NM_025330 Mm.358689 Dehydrogenase/reductase (SDR family) member 10 (Dhrs10) CCACTTAACTTTCAGGTCCCAAAGAAACTCAGGATAAGCTAGCTGCTGGCAGCGAGGCCCTCTCAGTAC NM_025330
18 1 18 1 M200008345 NM_028762 Mm.41022 RNA binding motif protein 19 (Rbm19) TTCAAAGGCGAGTCTTTGGCTGGGTACCCTAGCACAGCCTCTCTCCATGGACTCGGACACACCGTCAAC NM_028762
19 1 19 1 M300006090 AB054028 NA KIF24 gene for kinesin superfamily protein 24 partial cds ACTGGTGTCAACGCAGACTCCTCCCGTTCCCATGCTATCATCCAAATTCAGATCAAAGATTCAGCCAAGA AB054028
20 1 20 1 M200000247 NM_007466 Mm.181824 Apoptosis inhibitor 5 (Api5) Api5 AGCCAATAGTCTTTAGATTAAGGCAACAGACGGGAGGTTCGTGGAGTGTCTCATGTTGGGCATTTTTAG NM_007466 Api5

Total number of rows: 32146

Table truncated, full table size 4832 Kbytes.




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