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Platform GPL1409 Query DataSets for GPL1409
Status Public on Jun 13, 2005
Title Yeast Splicing Chip v6
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Saccharomyces cerevisiae
 
Description This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains a collection of 40-mers desiigned to detect hypothetical introns predicted by comparative genomics. The array also contains about 1000 70-mers from the Operon Yeast Genome Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed only once.
Keywords = Splicing
 
Contributor(s) Clark TA, Sugnet CW, Ares M
Submission date Aug 12, 2004
Last update date Jun 16, 2005
Contact name Todd A Burckin
E-mail(s) burckin@biology.ucsc.edu
Phone 831 459-5245
Fax 831 459-3139
Organization name University of California Santa Cruz
Department Molecular, Cell, & Developmental Biology
Lab Hartzog Lab
Street address 1156 High Street
City Santa Cruz
State/province CA
ZIP/Postal code 95062
Country USA
 
Samples (2) GSM28851, GSM28852
Series (1)
GSE1684 Exploring functional relationships between components of the gene expression machinery

Data table header descriptions
ID
Name Feature Name
ORF Yeast ORF
Type Feature Type
Block Block that the spot was printed in
Row Row within the block
Column Column within the block
SPOT_ID

Data table
ID Name ORF Type Block Row Column SPOT_ID
1 Cy3 Cy3 1 1 1 Cy3
2 Printing_Buffer print_buff 1 1 2 Printing_Buffer
3 MTR2_SJ1c YKL186C SJ 1 1 3
4 5s_rRNA rRNA 1 1 4 5s_rRNA
5 5.8s_rRNA***POOR*** POOR 1 1 5 5.8s_rRNA
6 18s_rRNA rRNA 1 1 6 18s_rRNA
7 25s_rRNA rRNA 1 1 7 25s_rRNA
8 5.8s_rRNA rRNA 1 1 8 5.8s_rRNA
9 RPS26A_SJ YGL189C SJ 1 1 9
10 RPS29A_SJa***WRONG*** YLR388W WRONG 1 1 10
11 YOL048C_SJ YOL048C SJ 1 1 11
12 YKR095W-A_SJ YKR095W-A SJ 1 1 12
13 YDR381C-A_SJ YDR381C-A SJ 1 1 13
14 YHR079C-A_SJ YHR079C-A SJ 1 1 14
15 RPL26B_SJ YGR034W SJ 1 1 15
16 BioB E_coli 1 1 16 BioB
17 BioC E_coli 1 1 17 BioC
18 BioD E_coli 1 1 18 BioD
19 Cre E_coli 1 1 19 Cre
20 lamB E_coli 1 1 20 lamB

Total number of rows: 9216

Table truncated, full table size 348 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary data files not provided

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