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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 28, 2011 |
| Title |
Mus musculus HoxD cluster tiling PRNFGMm2b520462F |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
Oligonucleotide tiling arrays manufactured using photolithography contain probes mapping to a 2 Mb region around the HoxD cluster. Probes corresponding to repetitive or low complexity sequences located within the region were excluded from the array. The arrays are based on NCBI build 36 of the mouse genome (mm8) and contained a total of 75,097 25-mer oligonucleotides (PM and MM) positioned every 15 bp mapping to the reverse strand of chr2: 73,709,305-75,470,233 and 6,323 probes (PM and MM) mapping to the forward strand of chr2: 74,453,853-74, 565,969.
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| Submission date |
Aug 23, 2011 |
| Last update date |
Nov 28, 2011 |
| Contact name |
Thomas Montavon |
| Organization name |
EPFL
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| Street address |
SV 2843, Station 19
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| City |
Lausanne |
| ZIP/Postal code |
1015 |
| Country |
Switzerland |
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| Samples (91)
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GSM786022, GSM786023, GSM786024, GSM786025, GSM786026, GSM786027
GSM786028, GSM786029, GSM786033, GSM786034, GSM786038, GSM786039, GSM786040, GSM786041, GSM786042, GSM786043, GSM786044, GSM786045, GSM786046, GSM786047, GSM1074304, GSM1074305, GSM1074306, GSM1074307, GSM1074308, GSM1074309, GSM1074310, GSM1074311, GSM1074312, GSM1074313, GSM1074314, GSM1074315, GSM1074316, GSM1074317, GSM1074318, GSM1074319, GSM1074320, GSM1074321, GSM1074322, GSM1074323, GSM1074324, GSM1074325, GSM1074326, GSM1074327, GSM1074328, GSM1074329, GSM1074330, GSM1074331, GSM1074332, GSM1074333, GSM1074334, GSM1074335, GSM1074336, GSM1074337, GSM1074338, GSM1074339, GSM1074340, GSM1074341, GSM1074342, GSM1074343, GSM1074344, GSM1083904, GSM1083905, GSM1083906, GSM1083907, GSM1083926, GSM1083927, GSM1083928, GSM1083929, GSM1083930, GSM1083931, GSM1083932, GSM1083933, GSM1083934, GSM1083935, GSM1083936, GSM1083937, GSM1104561, GSM1104562, GSM1104563, GSM1104564, GSM1104565, GSM1104566, GSM1104567, GSM1104568, GSM1104569, GSM1104570, GSM1519349, GSM1519350, GSM1519351, GSM1519352
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| Series (13)
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| GSE31654 |
Chromatin landscape at the HoxD locus in developing digits and forebrain |
| GSE31656 |
Transcription landscape at the HoxD locus in developing limbs and brain |
| GSE31658 |
Spatial organization of chromatin at the HoxD locus in developing limbs and brain |
| GSE31659 |
HoxD locus in the developing limb, digit, and brain |
| GSE43915 |
In embryo analysis of H3K27 trimethylation suggests a two-step process involving PRC2 interacting sequences and high GC content |
| GSE44357 |
Spatial organization of chromatin at the HoxD locus in developing caeca (4C tiling chip) |
| GSE44361 |
Chromatin landscape at the HoxD locus in developing caeca (ChIP-chip) |
| GSE44362 |
Transcription landscape at the HoxD locus in developing caeca |
| GSE45242 |
HoxD locus |
| GSE45454 |
A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs (ChIP-chip) |
| GSE45457 |
A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs |
| GSE62073 |
Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci (tiling) |
| GSE62269 |
Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci |
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| Supplementary file |
Size |
Download |
File type/resource |
| GPL14183_PRNFGMm2b520462F_rev.bpmap.gz |
1.4 Mb |
(ftp)(http) |
BPMAP |
| GPL14183_PRNFGMm2b520462F_rev.txt.gz |
1.6 Mb |
(ftp)(http) |
TXT |
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