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Status
Public on Mar 09, 2012
Title
Agilent-020736 miRNA-v3.1-7species-8x15K array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organisms
Caenorhabditis elegans ; Drosophila melanogaster ; Danio rerio ; Gallus gallus ; Homo sapiens ; Mus musculus ; Rattus norvegicus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
miRNA microarray probe design, v3.1 (2/19 2008) miRNAs (1776 targets) were taken from the Sanger miRNA database, version 11. Total targets (excluding mismatches): 1776(miR)+14(siRNA)+24(snRNA)+30(spike-in)+30(mRNA) = 1874 Full-length; 5prime G; Hsa,Mmu,Dre,Gga,Rno,Dme,Cel Arrays of this design have barcodes that begin with 16020736 or 2520736. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Sep 09, 2011
Last update date
Mar 09, 2012
Contact name
Andrea J Barczak
Organization name
UCSF Sandler Center Functional Genomics Core Facility
Street address
1550 4th St Rock Hall 545
City
San Francisco
State/province
CA
ZIP/Postal code
94143
Country
USA
Samples (11)
GSM796407 , GSM796408 , GSM796409 , GSM796410 , GSM897466 , GSM897467
Series (2)
GSE32126
miRNA measurements in wildtype and Eri1-deficient Th cells
GSE36607
miRNA expression during in vitro mouse T cell activation (D011.10+ CD4 T cells)
Relations
Affiliated with
GPL14558
Data table header descriptions
ID
Corresponding ProbeID from v3.2 array design
ProbeID_v3.1
Array feature IDs present in v3.1 raw data files
Category
Symbol
ShortSymbol
MatureAccession
Accession
miRNA_LIST
miRBase miRNA Accession(s)
ChromPos
SEQUENCE
Probe.Sequence
Orig.Sequence
Symbol.hsa
Symbol.mmu
Symbol.dre
Symbol.gga
Symbol.rno
Symbol.dme
Symbol.cel
MatureAccession.hsa
MatureAccession.mmu
MatureAccession.dre
MatureAccession.gga
MatureAccession.rno
MatureAccession.dme
MatureAccession.cel
Accession.hsa
Accession.mmu
Accession.dre
Accession.gga
Accession.rno
Accession.dme
Accession.cel
ChromPos.hsa
ChromPos.mmu
ChromPos.dre
ChromPos.gga
ChromPos.rno
ChromPos.dme
ChromPos.cel
Data table
ID
ProbeID_v3.1
Category
Symbol
ShortSymbol
MatureAccession
Accession
miRNA_LIST
ChromPos
SEQUENCE
Orig.Sequence
Symbol.hsa
Symbol.mmu
Symbol.dre
Symbol.gga
Symbol.rno
Symbol.dme
Symbol.cel
MatureAccession.hsa
MatureAccession.mmu
MatureAccession.dre
MatureAccession.gga
MatureAccession.rno
MatureAccession.dme
MatureAccession.cel
Accession.hsa
Accession.mmu
Accession.dre
Accession.gga
Accession.rno
Accession.dme
Accession.cel
ChromPos.hsa
ChromPos.mmu
ChromPos.dre
ChromPos.gga
ChromPos.rno
ChromPos.dme
ChromPos.cel
UCSF032_000001
UC1004681
miRNA
dme-let-0007
let-0007
MIMAT0000396
MI0000416
MI0000416
2L:18472034_18472111
GACTATACAACCTACTACCTCATTTTTTTTTT
UGAGGUAGUAGGUUGUAUAGU
dme-let-0007
MIMAT0000396
MI0000416
2L:18472034_18472111
UCSF032_000002
UC1004682
miRNA
hsa-let-0007a
let-0007a
MIMAT0000062
MI0000060,MI0000061,MI0000062
MI0000060 , MI0000061 , MI0000062
9:95978060_95978139, 11:121522440_121522511, 22:44887293_44887366
GAACTATACAACCTACTACCTCATTTTTTTTTT
UGAGGUAGUAGGUUGUAUAGUU
hsa-let-0007a
mmu-let-0007a
dre-let-0007a
gga-let-0007j
rno-let-0007a
cel-let-0007
MIMAT0000062
MIMAT0000521
MIMAT0001759
MIMAT0001101
MIMAT0000774
MIMAT0000001
MI0000060,MI0000061,MI0000062
MI0000556,MI0000557
MI0001857,MI0001858,MI0001860,MI0001861,MI0001862,MI0001863
MI0001171,MI0001234,MI0001259
MI0000827,MI0000828
MI0000001
9:95978060_95978139, 11:121522440_121522511, 22:44887293_44887366
13:48633548_48633641, 9:41344799_41344894
11:24785507_24785595, 15:19046864_19046947, 4:19395801_19395907, 5:21773420_21773512, Zv7_scaffold2643:504151_504274, 6:38526277_38526405
1:73421272_73421347, 12:6302911_6303000, 24:3380993_3381064
17:22119767_22119860, 8:44525769_44525864
X:14744091_14744189
UCSF032_000003
UC1004683
miRNA
hsa-let-0007a*
let-0007a*
MIMAT0004481
MI0000060,MI0000062
MI0000060 , MI0000062
9:95978060_95978139, 22:44887293_44887366
GGAAAGACAGTAGATTGTATAGTTTTTTTTTT
CUAUACAAUCUACUGUCUUUC
hsa-let-0007a*
MIMAT0004481
MI0000060,MI0000062
9:95978060_95978139, 22:44887293_44887366
UCSF032_000004
UC1004684
miRNA
mmu-let-0007a*
let-0007a*
MIMAT0004620
MI0000556
MI0000556
13:48633548_48633641
GGGAAAGACAGTAGATTGTATAGTTTTTTTTTT
CUAUACAAUCUACUGUCUUUCC
mmu-let-0007a*
MIMAT0004620
MI0000556
13:48633548_48633641
UCSF032_000005
UC1004685
miRNA
hsa-let-0007b
let-0007b
MIMAT0000063
MI0000063
MI0000063
22:44888230_44888312
GAACCACACAACCTACTACCTCATTTTTTTTTT
UGAGGUAGUAGGUUGUGUGGUU
hsa-let-0007b
mmu-let-0007b
dre-let-0007b
gga-let-0007b
rno-let-0007b
MIMAT0000063
MIMAT0000522
MIMAT0001760
MIMAT0001102
MIMAT0000775
MI0000063
MI0000558
MI0001865
MI0001172
MI0000829
22:44888230_44888312
15:85537749_85537833
4:19394794_19394887
1:73422101_73422185
7:123701205_123701289
UCSF032_000006
UC1004686
miRNA
hsa-let-0007b*
let-0007b*
MIMAT0004482
MI0000063
MI0000063
22:44888230_44888312
GGGGAAGGCAGTAGGTTGTATAGTTTTTTTTTT
CUAUACAACCUACUGCCUUCCC
hsa-let-0007b*
mmu-let-0007b*
rno-let-0007b*
MIMAT0004482
MIMAT0004621
MIMAT0004705
MI0000063
MI0000558
MI0000829
22:44888230_44888312
15:85537749_85537833
7:123701205_123701289
UCSF032_000007
UC1004687
miRNA
hsa-let-0007c
let-0007c
MIMAT0000064
MI0000064
MI0000064
21:16834019_16834102
GAACCATACAACCTACTACCTCATTTTTTTTTT
UGAGGUAGUAGGUUGUAUGGUU
hsa-let-0007c
mmu-let-0007c
dre-let-0007c
gga-let-0007c
rno-let-0007c
MIMAT0000064
MIMAT0000523
MIMAT0001761
MIMAT0001104
MIMAT0000776
MI0000064
MI0000559,MI0000560
MI0001866,MI0001867
MI0001174
MI0000830,MI0000831
21:16834019_16834102
16:77599902_77599995, 15:85537033_85537127
15:30029857_30029963, 10:33598433_33598524
1:102425086_102425169
11:16398264_16398357, 7:123700790_123700884
UCSF032_000008
UC1004688
miRNA
hsa-let-0007c*
let-0007c*
MIMAT0004483
MI0000064
MI0000064
21:16834019_16834102
GTAACTCCCAGGGTGTAACTCTATTTTTTTTTT
UAGAGUUACACCCUGGGAGUUA
hsa-let-0007c*
MIMAT0004483
MI0000064
21:16834019_16834102
UCSF032_000009
UC1004689
miRNA
mmu-let-0007c-1*
let-0007c-1*
MIMAT0004622
MI0000559
MI0000559
16:77599902_77599995
GGGAAAGCTAGAAGGTTGTACAGTTTTTTTTTT
CUGUACAACCUUCUAGCUUUCC
mmu-let-0007c-1*
MIMAT0004622
MI0000559
16:77599902_77599995
UCSF032_000010
UC1004690
miRNA
hsa-let-0007d
let-0007d
MIMAT0000065
MI0000065
MI0000065
9:95980937_95981023
GAACTATGCAACCTACTACCTCTTTTTTTTTTT
AGAGGUAGUAGGUUGCAUAGUU
hsa-let-0007d
mmu-let-0007d
rno-let-0007d
MIMAT0000065
MIMAT0000383
MIMAT0000562
MI0000065
MI0000405
MI0000601
9:95980937_95981023
13:48631381_48631483
17:22121894_22121991
UCSF032_000011
UC1004691
miRNA
gga-let-0007d
let-0007d
MIMAT0001161
MI0001232
MI0001232
12:6301452_6301554
GACTATGCAACCCACTACCTCTTTTTTTTTTT
AGAGGUAGUGGGUUGCAUAGU
gga-let-0007d
MIMAT0001161
MI0001232
12:6301452_6301554
UCSF032_000012
UC1004692
miRNA
dre-let-0007d
let-0007d
MIMAT0001762
MI0001868,MI0001870
MI0001868 , MI0001870
16:25309072_25309168, 19:7105749_7105836
GAACCATACAACCAACTACCTCATTTTTTTTTT
UGAGGUAGUUGGUUGUAUGGUU
dre-let-0007d
MIMAT0001762
MI0001868,MI0001870
16:25309072_25309168, 19:7105749_7105836
UCSF032_000013
UC1004693
miRNA
hsa-let-0007d*
let-0007d*
MIMAT0004484
MI0000065
MI0000065
9:95980937_95981023
GAGAAAGGCAGCAGGTCGTATAGTTTTTTTTTT
CUAUACGACCUGCUGCCUUUCU
hsa-let-0007d*
mmu-let-0007d*
rno-let-0007d*
MIMAT0004484
MIMAT0000384
MIMAT0000563
MI0000065
MI0000405
MI0000601
9:95980937_95981023
13:48631381_48631483
17:22121894_22121991
UCSF032_000014
UC1004694
miRNA
hsa-let-0007e
let-0007e
MIMAT0000066
MI0000066
MI0000066
19:56887851_56887929
GAACTATACAACCTCCTACCTCATTTTTTTTTT
UGAGGUAGGAGGUUGUAUAGUU
hsa-let-0007e
mmu-let-0007e
rno-let-0007e
MIMAT0000066
MIMAT0000524
MIMAT0000777
MI0000066
MI0000561
MI0000832
19:56887851_56887929
17:17967316_17967408
1:56487134_56487226
UCSF032_000015
UC1004695
miRNA
dre-let-0007e
let-0007e
MIMAT0001763
MI0001871
MI0001871
Zv7_scaffold2643:413141_413240
GAACTATTCAATCTACTACCTCATTTTTTTTTT
UGAGGUAGUAGAUUGAAUAGUU
dre-let-0007e
gga-let-0007k
MIMAT0001763
MIMAT0001182
MI0001871
MI0001263
Zv7_scaffold2643:413141_413240
26:1442897_1442979
UCSF032_000016
UC1004696
miRNA
hsa-let-0007e*
let-0007e*
MIMAT0004485
MI0000066
MI0000066
19:56887851_56887929
GGGAAAGCTAGGAGGCCGTATAGTTTTTTTTTT
CUAUACGGCCUCCUAGCUUUCC
hsa-let-0007e*
rno-let-0007e*
MIMAT0004485
MIMAT0004706
MI0000066
MI0000832
19:56887851_56887929
1:56487134_56487226
UCSF032_000017
UC1004697
miRNA
hsa-let-0007f
let-0007f
MIMAT0000067
MI0000067,MI0000068
MI0000067 , MI0000068
9:95978450_95978536, X:53600878_53600960
GAACTATACAATCTACTACCTCATTTTTTTTTT
UGAGGUAGUAGAUUGUAUAGUU
hsa-let-0007f
mmu-let-0007f
dre-let-0007f
gga-let-0007f
rno-let-0007f
MIMAT0000067
MIMAT0000525
MIMAT0001764
MIMAT0001162
MIMAT0000778
MI0000067,MI0000068
MI0000562,MI0000563
MI0001872
MI0001233
MI0000833,MI0000834
9:95978450_95978536, X:53600878_53600960
13:48633198_48633286, X:148346889_148346971
11:24785292_24785407
12:6302497_6302583
17:22120135_22120223, X:41376943_41377025
UCSF032_000018
UC1004698
miRNA
hsa-let-0007f-1*
let-0007f-1*
MIMAT0004486
MI0000067
MI0000067
9:95978450_95978536
GGGGAAGGCAATAGATTGTATAGTTTTTTTTTT
CUAUACAAUCUAUUGCCUUCCC
hsa-let-0007f-1*
mmu-let-0007f*
MIMAT0004486
MIMAT0004623
MI0000067
MI0000562
9:95978450_95978536
13:48633198_48633286
UCSF032_000019
UC1004699
miRNA
hsa-let-0007f-2*
let-0007f-2*
MIMAT0004487
MI0000068
MI0000068
X:53600878_53600960
GGGAAAGACAGTAGACTGTATAGTTTTTTTTTT
CUAUACAGUCUACUGUCUUUCC
hsa-let-0007f-2*
MIMAT0004487
MI0000068
X:53600878_53600960
UCSF032_000020
UC1004700
miRNA
gga-let-0007g
let-0007g
MIMAT0001160
MI0001230
MI0001230
12:2809078_2809160
GACTGTACAAACTACTACCTCATTTTTTTTTT
UGAGGUAGUAGUUUGUACAGU
gga-let-0007g
MIMAT0001160
MI0001230
12:2809078_2809160
Total number of rows: 2147 Table truncated, full table size 534 Kbytes .
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