NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL14557 Query DataSets for GPL14557
Status Public on Mar 09, 2012
Title Agilent-020736 miRNA-v3.1-7species-8x15K array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Caenorhabditis elegans; Drosophila melanogaster; Danio rerio; Gallus gallus; Homo sapiens; Mus musculus; Rattus norvegicus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description miRNA microarray probe design, v3.1 (2/19 2008)
miRNAs (1776 targets) were taken from the Sanger miRNA database, version 11.
Total targets (excluding mismatches):
1776(miR)+14(siRNA)+24(snRNA)+30(spike-in)+30(mRNA) = 1874
Full-length; 5prime G; Hsa,Mmu,Dre,Gga,Rno,Dme,Cel
Arrays of this design have barcodes that begin with 16020736 or 2520736.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 09, 2011
Last update date Mar 09, 2012
Contact name Andrea J Barczak
Organization name UCSF Sandler Center Functional Genomics Core Facility
Street address 1550 4th St Rock Hall 545
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Samples (11) GSM796407, GSM796408, GSM796409, GSM796410, GSM897466, GSM897467 
Series (2)
GSE32126 miRNA measurements in wildtype and Eri1-deficient Th cells
GSE36607 miRNA expression during in vitro mouse T cell activation (D011.10+ CD4 T cells)
Relations
Affiliated with GPL14558

Data table header descriptions
ID Corresponding ProbeID from v3.2 array design
ProbeID_v3.1 Array feature IDs present in v3.1 raw data files
Category
Symbol
ShortSymbol
MatureAccession
Accession
miRNA_LIST miRBase miRNA Accession(s)
ChromPos
SEQUENCE Probe.Sequence
Orig.Sequence
Symbol.hsa
Symbol.mmu
Symbol.dre
Symbol.gga
Symbol.rno
Symbol.dme
Symbol.cel
MatureAccession.hsa
MatureAccession.mmu
MatureAccession.dre
MatureAccession.gga
MatureAccession.rno
MatureAccession.dme
MatureAccession.cel
Accession.hsa
Accession.mmu
Accession.dre
Accession.gga
Accession.rno
Accession.dme
Accession.cel
ChromPos.hsa
ChromPos.mmu
ChromPos.dre
ChromPos.gga
ChromPos.rno
ChromPos.dme
ChromPos.cel

Data table
ID ProbeID_v3.1 Category Symbol ShortSymbol MatureAccession Accession miRNA_LIST ChromPos SEQUENCE Orig.Sequence Symbol.hsa Symbol.mmu Symbol.dre Symbol.gga Symbol.rno Symbol.dme Symbol.cel MatureAccession.hsa MatureAccession.mmu MatureAccession.dre MatureAccession.gga MatureAccession.rno MatureAccession.dme MatureAccession.cel Accession.hsa Accession.mmu Accession.dre Accession.gga Accession.rno Accession.dme Accession.cel ChromPos.hsa ChromPos.mmu ChromPos.dre ChromPos.gga ChromPos.rno ChromPos.dme ChromPos.cel
UCSF032_000001 UC1004681 miRNA dme-let-0007 let-0007 MIMAT0000396 MI0000416 MI0000416 2L:18472034_18472111 GACTATACAACCTACTACCTCATTTTTTTTTT UGAGGUAGUAGGUUGUAUAGU dme-let-0007 MIMAT0000396 MI0000416 2L:18472034_18472111
UCSF032_000002 UC1004682 miRNA hsa-let-0007a let-0007a MIMAT0000062 MI0000060,MI0000061,MI0000062 MI0000060, MI0000061, MI0000062 9:95978060_95978139, 11:121522440_121522511, 22:44887293_44887366 GAACTATACAACCTACTACCTCATTTTTTTTTT UGAGGUAGUAGGUUGUAUAGUU hsa-let-0007a mmu-let-0007a dre-let-0007a gga-let-0007j rno-let-0007a cel-let-0007 MIMAT0000062 MIMAT0000521 MIMAT0001759 MIMAT0001101 MIMAT0000774 MIMAT0000001 MI0000060,MI0000061,MI0000062 MI0000556,MI0000557 MI0001857,MI0001858,MI0001860,MI0001861,MI0001862,MI0001863 MI0001171,MI0001234,MI0001259 MI0000827,MI0000828 MI0000001 9:95978060_95978139, 11:121522440_121522511, 22:44887293_44887366 13:48633548_48633641, 9:41344799_41344894 11:24785507_24785595, 15:19046864_19046947, 4:19395801_19395907, 5:21773420_21773512, Zv7_scaffold2643:504151_504274, 6:38526277_38526405 1:73421272_73421347, 12:6302911_6303000, 24:3380993_3381064 17:22119767_22119860, 8:44525769_44525864 X:14744091_14744189
UCSF032_000003 UC1004683 miRNA hsa-let-0007a* let-0007a* MIMAT0004481 MI0000060,MI0000062 MI0000060, MI0000062 9:95978060_95978139, 22:44887293_44887366 GGAAAGACAGTAGATTGTATAGTTTTTTTTTT CUAUACAAUCUACUGUCUUUC hsa-let-0007a* MIMAT0004481 MI0000060,MI0000062 9:95978060_95978139, 22:44887293_44887366
UCSF032_000004 UC1004684 miRNA mmu-let-0007a* let-0007a* MIMAT0004620 MI0000556 MI0000556 13:48633548_48633641 GGGAAAGACAGTAGATTGTATAGTTTTTTTTTT CUAUACAAUCUACUGUCUUUCC mmu-let-0007a* MIMAT0004620 MI0000556 13:48633548_48633641
UCSF032_000005 UC1004685 miRNA hsa-let-0007b let-0007b MIMAT0000063 MI0000063 MI0000063 22:44888230_44888312 GAACCACACAACCTACTACCTCATTTTTTTTTT UGAGGUAGUAGGUUGUGUGGUU hsa-let-0007b mmu-let-0007b dre-let-0007b gga-let-0007b rno-let-0007b MIMAT0000063 MIMAT0000522 MIMAT0001760 MIMAT0001102 MIMAT0000775 MI0000063 MI0000558 MI0001865 MI0001172 MI0000829 22:44888230_44888312 15:85537749_85537833 4:19394794_19394887 1:73422101_73422185 7:123701205_123701289
UCSF032_000006 UC1004686 miRNA hsa-let-0007b* let-0007b* MIMAT0004482 MI0000063 MI0000063 22:44888230_44888312 GGGGAAGGCAGTAGGTTGTATAGTTTTTTTTTT CUAUACAACCUACUGCCUUCCC hsa-let-0007b* mmu-let-0007b* rno-let-0007b* MIMAT0004482 MIMAT0004621 MIMAT0004705 MI0000063 MI0000558 MI0000829 22:44888230_44888312 15:85537749_85537833 7:123701205_123701289
UCSF032_000007 UC1004687 miRNA hsa-let-0007c let-0007c MIMAT0000064 MI0000064 MI0000064 21:16834019_16834102 GAACCATACAACCTACTACCTCATTTTTTTTTT UGAGGUAGUAGGUUGUAUGGUU hsa-let-0007c mmu-let-0007c dre-let-0007c gga-let-0007c rno-let-0007c MIMAT0000064 MIMAT0000523 MIMAT0001761 MIMAT0001104 MIMAT0000776 MI0000064 MI0000559,MI0000560 MI0001866,MI0001867 MI0001174 MI0000830,MI0000831 21:16834019_16834102 16:77599902_77599995, 15:85537033_85537127 15:30029857_30029963, 10:33598433_33598524 1:102425086_102425169 11:16398264_16398357, 7:123700790_123700884
UCSF032_000008 UC1004688 miRNA hsa-let-0007c* let-0007c* MIMAT0004483 MI0000064 MI0000064 21:16834019_16834102 GTAACTCCCAGGGTGTAACTCTATTTTTTTTTT UAGAGUUACACCCUGGGAGUUA hsa-let-0007c* MIMAT0004483 MI0000064 21:16834019_16834102
UCSF032_000009 UC1004689 miRNA mmu-let-0007c-1* let-0007c-1* MIMAT0004622 MI0000559 MI0000559 16:77599902_77599995 GGGAAAGCTAGAAGGTTGTACAGTTTTTTTTTT CUGUACAACCUUCUAGCUUUCC mmu-let-0007c-1* MIMAT0004622 MI0000559 16:77599902_77599995
UCSF032_000010 UC1004690 miRNA hsa-let-0007d let-0007d MIMAT0000065 MI0000065 MI0000065 9:95980937_95981023 GAACTATGCAACCTACTACCTCTTTTTTTTTTT AGAGGUAGUAGGUUGCAUAGUU hsa-let-0007d mmu-let-0007d rno-let-0007d MIMAT0000065 MIMAT0000383 MIMAT0000562 MI0000065 MI0000405 MI0000601 9:95980937_95981023 13:48631381_48631483 17:22121894_22121991
UCSF032_000011 UC1004691 miRNA gga-let-0007d let-0007d MIMAT0001161 MI0001232 MI0001232 12:6301452_6301554 GACTATGCAACCCACTACCTCTTTTTTTTTTT AGAGGUAGUGGGUUGCAUAGU gga-let-0007d MIMAT0001161 MI0001232 12:6301452_6301554
UCSF032_000012 UC1004692 miRNA dre-let-0007d let-0007d MIMAT0001762 MI0001868,MI0001870 MI0001868, MI0001870 16:25309072_25309168, 19:7105749_7105836 GAACCATACAACCAACTACCTCATTTTTTTTTT UGAGGUAGUUGGUUGUAUGGUU dre-let-0007d MIMAT0001762 MI0001868,MI0001870 16:25309072_25309168, 19:7105749_7105836
UCSF032_000013 UC1004693 miRNA hsa-let-0007d* let-0007d* MIMAT0004484 MI0000065 MI0000065 9:95980937_95981023 GAGAAAGGCAGCAGGTCGTATAGTTTTTTTTTT CUAUACGACCUGCUGCCUUUCU hsa-let-0007d* mmu-let-0007d* rno-let-0007d* MIMAT0004484 MIMAT0000384 MIMAT0000563 MI0000065 MI0000405 MI0000601 9:95980937_95981023 13:48631381_48631483 17:22121894_22121991
UCSF032_000014 UC1004694 miRNA hsa-let-0007e let-0007e MIMAT0000066 MI0000066 MI0000066 19:56887851_56887929 GAACTATACAACCTCCTACCTCATTTTTTTTTT UGAGGUAGGAGGUUGUAUAGUU hsa-let-0007e mmu-let-0007e rno-let-0007e MIMAT0000066 MIMAT0000524 MIMAT0000777 MI0000066 MI0000561 MI0000832 19:56887851_56887929 17:17967316_17967408 1:56487134_56487226
UCSF032_000015 UC1004695 miRNA dre-let-0007e let-0007e MIMAT0001763 MI0001871 MI0001871 Zv7_scaffold2643:413141_413240 GAACTATTCAATCTACTACCTCATTTTTTTTTT UGAGGUAGUAGAUUGAAUAGUU dre-let-0007e gga-let-0007k MIMAT0001763 MIMAT0001182 MI0001871 MI0001263 Zv7_scaffold2643:413141_413240 26:1442897_1442979
UCSF032_000016 UC1004696 miRNA hsa-let-0007e* let-0007e* MIMAT0004485 MI0000066 MI0000066 19:56887851_56887929 GGGAAAGCTAGGAGGCCGTATAGTTTTTTTTTT CUAUACGGCCUCCUAGCUUUCC hsa-let-0007e* rno-let-0007e* MIMAT0004485 MIMAT0004706 MI0000066 MI0000832 19:56887851_56887929 1:56487134_56487226
UCSF032_000017 UC1004697 miRNA hsa-let-0007f let-0007f MIMAT0000067 MI0000067,MI0000068 MI0000067, MI0000068 9:95978450_95978536, X:53600878_53600960 GAACTATACAATCTACTACCTCATTTTTTTTTT UGAGGUAGUAGAUUGUAUAGUU hsa-let-0007f mmu-let-0007f dre-let-0007f gga-let-0007f rno-let-0007f MIMAT0000067 MIMAT0000525 MIMAT0001764 MIMAT0001162 MIMAT0000778 MI0000067,MI0000068 MI0000562,MI0000563 MI0001872 MI0001233 MI0000833,MI0000834 9:95978450_95978536, X:53600878_53600960 13:48633198_48633286, X:148346889_148346971 11:24785292_24785407 12:6302497_6302583 17:22120135_22120223, X:41376943_41377025
UCSF032_000018 UC1004698 miRNA hsa-let-0007f-1* let-0007f-1* MIMAT0004486 MI0000067 MI0000067 9:95978450_95978536 GGGGAAGGCAATAGATTGTATAGTTTTTTTTTT CUAUACAAUCUAUUGCCUUCCC hsa-let-0007f-1* mmu-let-0007f* MIMAT0004486 MIMAT0004623 MI0000067 MI0000562 9:95978450_95978536 13:48633198_48633286
UCSF032_000019 UC1004699 miRNA hsa-let-0007f-2* let-0007f-2* MIMAT0004487 MI0000068 MI0000068 X:53600878_53600960 GGGAAAGACAGTAGACTGTATAGTTTTTTTTTT CUAUACAGUCUACUGUCUUUCC hsa-let-0007f-2* MIMAT0004487 MI0000068 X:53600878_53600960
UCSF032_000020 UC1004700 miRNA gga-let-0007g let-0007g MIMAT0001160 MI0001230 MI0001230 12:2809078_2809160 GACTGTACAAACTACTACCTCATTTTTTTTTT UGAGGUAGUAGUUUGUACAGU gga-let-0007g MIMAT0001160 MI0001230 12:2809078_2809160

Total number of rows: 2147

Table truncated, full table size 534 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14557_020736_D_GEO_20080623_v1.txt.gz 254.5 Kb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap