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Platform GPL14591 Query DataSets for GPL14591
Status Public on Nov 28, 2012
Title MYcroarray Mycobacterium tuberculosis H37Rv 3x20K-5rep
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mycobacterium tuberculosis H37Rv
Manufacturer MYcroarray
Manufacture protocol In Situ Synthesis Technology: oligonucleotides are directly synthesize on low-background glass slides polished to atomic flatness (±20 angstroms). The synthesis is performed by using the robust phosphoramidite chemistry. Catalog bacteria mycroarray: Mycobacterium tuberculosis H37Rv Microarrays 3X20K
 
 
Submission date Sep 20, 2011
Last update date Sep 20, 2011
Contact name Andrea Cossu
Organization name University of Massachusetts, Amherst
Department Department of Food Science
Lab Division of Food Microbiology
Street address 102 Holdsworth way
City Amherst
State/province MA
ZIP/Postal code 01003
Country USA
 
Samples (2) GSM798891, GSM852135
Series (5)
GSE32236 Differentially regulated genes induced by in vitro generated Mycobacterium tuberculosis cell wall deficient forms
GSE32237 Transcriptional profile of pathogenic and non-pathogenic in vitro generated mycobacterial cell wall deficient forms
GSE34622 Differentially regulated genes induced in Mycobacterium smegmatis by in vitro acid-nitrosative multi-stress

Data table header descriptions
ID
ORF locus tag
SEQUENCE
GENE_ID ID MYcroarray number of sequence used to identify oligonucleotide probe
GENE SYMBOL Gene symbol
DESCRIPTION Gene description

Data table
ID ORF SEQUENCE GENE_ID GENE SYMBOL DESCRIPTION
Rv0001 Rv0001 TTGACCGATGACCCCGGTTCAGGCTTCACCACAGTGTGGAACGCGG 1323090 dnaA CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA
Rv0002 Rv0002 TCGTTTGCTACGAGAGTCTTTCGCCGATGCGGTGTCGTGGGTGGC 1323158 dnaN DNA POLYMERASE III (BETA CHAIN) DNAN (DNA
Rv0003 Rv0003 GTGTACGTCCGTCATTTGGGGCTGCGTGACTTCCGGTCCTGGGCA 1323096 recF DNA REPLICATION AND REPAIR PROTEIN RECF
Rv0004 Rv0004 GGGTCCGGGGCCCGACATTCGTGATCCACAACCGCTGGGTAAGGC 1323099 null CONSERVED HYPOTHETICAL PROTEIN
Rv0005 Rv0005 CGGCGACTCAACCGCATGCACGCAACCCCTGAGGAGAGTATTCGGA 1323267 gyrB DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE
Rv0006 Rv0006 TGACAGACACGACGTTGCCGCCTGACGACTCGCTCGACCGGATCG 1323204 gyrA DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE
Rv0007 Rv0007 GCACATCGGGCAGCGACCGGGCCAGGCCGCATACCAGATGCTGGAG 1323113 null POSSIBLE CONSERVED MEMBRANE PROTEIN
Rv0008c Rv0008c TGGTGGCCAACCTACCGCAGGCCCTACAGGACGCCCGGACCCAAC 1323216 null POSSIBLE MEMBRANE PROTEIN
Rv0009 Rv0009 CGGAAACCATGCGCCCAAGACCGTCGCCAATTTTGTGGGCCTTGC 1323169 ppiA PROBABLE IRON-REGULATED PEPTIDYL-PROLYL
Rv0010c Rv0010c ATGCAGCAAACAGCATGGGCGCCTCGCACCTCGGGAATCGCTGGT 1323093 null PROBABLE CONSERVED MEMBRANE PROTEIN
Rv0011c Rv0011c GCCCAAGTCCAAGGTCCGCAAGAAGAACGACTTCACCGTCAGCGCG 1323108 null PROBABLE CONSERVED TRANSMEMBRANE PROTEIN
Rv0012 Rv0012 GGCGTGGCGTTTCAGTGTCCCCTTAGTGTGCTTGCTGGCGGGGCTG 1323105 null PROBABLE CONSERVED MEMBRANE PROTEIN
Rv0013 Rv0013 ACGACAGCTTCGTGTTCAACCTGGTGCAGTACCTCGGCCAGCTCG 1323102 trpG POSSIBLE ANTHRANILATE SYNTHASE COMPONENT II TRPG
Rv0014c Rv0014c ATGACCACCCCTTCCCACCTGTCCGACCGCTACGAACTTGGCGAA 1323124 pknB TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B
Rv0015c Rv0015c CCGAGTTGGCGTGACGCTGTCGGGCAGATACCGCCTGCAGCGCCT 1323110 pknA TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A
Rv0016c Rv0016c CGTGTTGCTACTGCTCAACGCGACCATGACGCAGGTCTTCACCGCC 1323121 pbpA PROBABLE PENICILLIN-BINDING PROTEIN PBPA
Rv0017c Rv0017c GGGGTGCCCTGGGACTTGACTAGCTACGGACTGGCCTTCCTGACC 1323116 rodA PROBABLE CELL DIVISION PROTEIN RODA
Rv0018c Rv0018c GGCAACTCGGCTATCGCAGCGCAAGTCGAGATGGAGCCCGATCTC 1323135 ppp POSSIBLE SERINE/THREONINE PHOSPHATASE PPP
Rv0019c Rv0019c CGAAGGTGCGTTGACTGGCGCGCGTATCACGCTGAGCGAACAGCC 1323119 null CONSERVED HYPOTHETICAL PROTEIN
Rv0020c Rv0020c GCGTTTGCCCGCATCTTTGGAGGCTCGATCGTCCCGCAAGAGGTCG 1323130 TB39.8 CONSERVED HYPOTHETICAL PROTEIN TB39.8

Total number of rows: 3975

Table truncated, full table size 424 Kbytes.




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