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Platform GPL14676 Query DataSets for GPL14676
Status Public on Apr 02, 2012
Title RIMB/Wutz laboratory Mus musculus 385K Tiling array [2007-01-30_chrXs_2.aw]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen Systems Inc.
Manufacture protocol NimbleGen Systems Inc.
 
Description DESIGN_ID: 5181; DESIGN_NAME: [2007-01-30_chrXs_2.aw]. 162,5 Mb of the mouse X chromosome and 14,6 Mb of the mouse chromosome 17 tiled at 250 bp spacing excluding repeat masked regions. Native NimbleGen file (ndf, pos) are linked below as supplementary files
 
Submission date Oct 05, 2011
Last update date Apr 02, 2012
Contact name Celine Morey
E-mail(s) celine.morey@univ-paris-diderot.fr
Phone +33 1 57278930
Organization name UMR7216-Epigenetics and stem cell
Department University Paris 7
Lab Non-coding RNAs, differentiation and development
Street address 35 rue Hélène Brion
City Paris
ZIP/Postal code 75013
Country France
 
Samples (30) GSM810493, GSM810494, GSM810495, GSM810496, GSM810497, GSM810498 
Series (3)
GSE32655 H3K27me3 profiles along the length of the X chromosome in trophoblast stem (TS) cells, ChIP-chip
GSE50587 H3K27me3 and H3K4me2 profiles along the length of the X chromosome in trophoblast stem (TS) cells and Extra-embryonic endoderm stem cells (XEN), ChIP-chip
GSE68536 H3K27me3 profiles along the length of the X chromosome in trophoblast stem (TS) cells showing inverted X-inactivation profiles, ChIP-chip

Data table header descriptions
ID
SEQ_ID
CHROMOSOME
POSITION
NUMBER
LENGTH
GC
RANGE_GB GenBank accession number
RANGE_START
RANGE_END
SEQUENCE probe sequence

Data table
ID SEQ_ID CHROMOSOME POSITION NUMBER LENGTH GC RANGE_GB RANGE_START RANGE_END SEQUENCE
MMUS36_CHR17CHR17P004657287 chr17_wt_s chr17 4657287 1 51 0.43 NC_000083.4 4657287 4657337 AAATACATATGTGATAGGCAGGGCAATACAGACCAACAGGGAAACGATGCT
MMUS36_CHR17CHR17P004657502 chr17_wt_s chr17 4657502 1 56 0.34 NC_000083.4 4657502 4657557 CTGGAGTGGGCAGAAAGAACTCTTAGACAATGTAAAATCAAATCAAAAAGAAAATG
MMUS36_CHR17CHR17P004657742 chr17_wt_s chr17 4657742 1 50 0.46 NC_000083.4 4657742 4657791 AGGTCTTGAATGGGCCATTGATAAAGCCAGCACACCAAAAAGGCCAGTAA
MMUS36_CHR17CHR17P004657972 chr17_wt_s chr17 4657972 1 50 0.48 NC_000083.4 4657972 4658021 GTAGCCCCACCCCTGCAGTTTCTCCCCATAACAATTGCAACTGAAATATC
MMUS36_CHR17CHR17P004658197 chr17_wt_s chr17 4658197 1 58 0.40 NC_000083.4 4658197 4658254 AGATTTTTCAAAGCAAAGGCTACCTCTACAGCCCACAGGGATAGTATTGATGATGTTT
MMUS36_CHR17CHR17P004658561 chr17_wt_s chr17 4658561 1 50 0.44 NC_000083.4 4658561 4658610 TTGAGTTTTATGACTGGTCACATCCACCGCCAATTCTCACTGAGGTGAAA
MMUS36_CHR17CHR17P004658701 chr17_wt_s chr17 4658701 1 50 0.46 NC_000083.4 4658701 4658750 TGAGAGATGGAAACAAGGCATGCGAAAGCAAGTCCAGATAGCTGAGATCT
MMUS36_CHR17CHR17P004658928 chr17_wt_s chr17 4658928 1 50 0.44 NC_000083.4 4658928 4658977 ACTAAGAGACTTTGTTATAGACACACACTATGAGGCAGCCCACTAGCTGT
MMUS36_CHR17CHR17P004659158 chr17_wt_s chr17 4659158 1 52 0.42 NC_000083.4 4659158 4659209 GAAGATATGACTCCTCGTGTTTTTCACTCTGAGGATATTTAGCCAGCACAAG
MMUS36_CHR17CHR17P004659400 chr17_wt_s chr17 4659400 1 50 0.52 NC_000083.4 4659400 4659449 CCCCAGGGGACTGATGGGCTATTCGTCCAGAATCATACTCTAGGGAAAGA
MMUS36_CHR17CHR17P004659698 chr17_wt_s chr17 4659698 1 56 0.18 NC_000083.4 4659698 4659753 AAAACTGATACTATATGTTATATTATTCTAGATTTTATAATTACAGTATGTTAAAG
MMUS36_CHR17CHR17P004659981 chr17_wt_s chr17 4659981 1 56 0.27 NC_000083.4 4659981 4660036 AGTAGGCAATATTTTATTCTGTGATAATTTTGAAATTATATCATTTGTCCCTTTCC
MMUS36_CHR17CHR17P004660521 chr17_wt_s chr17 4660521 1 57 0.40 NC_000083.4 4660521 4660577 ATATATGTTTCAGGACCGATCATTTGGTACTGGGTAACCAGTTGGTGTACTTGGATA
MMUS36_CHR17CHR17P004660661 chr17_wt_s chr17 4660661 1 50 0.46 NC_000083.4 4660661 4660710 GGGTAACCAGTTGGTGAACTTTCCCTGAAGGAAAGACTATTTCTCCACTC
MMUS36_CHR17CHR17P004660876 chr17_wt_s chr17 4660876 1 60 0.38 NC_000083.4 4660876 4660935 ATACACTCTTGCAGCAAACTCTGTTCTTCTATCTTCATATATGTGCAATGGCACACATGT
MMUS36_CHR17CHR17P004661106 chr17_wt_s chr17 4661106 1 58 0.34 NC_000083.4 4661106 4661163 AGATATGGCCTGTGGTCTTCAAATATTTTCAGTGACTCCTTAATTTATCAAAGGAAGA
MMUS36_CHR17CHR17P004661348 chr17_wt_s chr17 4661348 1 57 0.26 NC_000083.4 4661348 4661404 ATATACTAATTTTGTTTATTTTCTCTTTTCCCTATCTCAGCAATCATTATACAGTTG
MMUS36_CHR17CHR17P004661648 chr17_wt_s chr17 4661648 1 50 0.44 NC_000083.4 4661648 4661697 CAGTCAATAAAGTTCTCATCTCCAGGGCTGAAGACATGCAGAAGATTCAG
MMUS36_CHR17CHR17P004661873 chr17_wt_s chr17 4661873 1 59 0.37 NC_000083.4 4661873 4661931 TTAATTAAAGTGCTTGTCACCAAGCTTGAAGACTTAAGTGCCCTGGAACATATGTGTAA
MMUS36_CHR17CHR17P004662088 chr17_wt_s chr17 4662088 1 50 0.44 NC_000083.4 4662088 4662137 CCTCACACTCAAGTACATGCACACACAAGTATGTACACACAAGCACTCAT

Total number of rows: 388000

Table truncated, full table size 55448 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL14676_2007-01-30_chrXs_2_aw.ndf.gz 16.3 Mb (ftp)(http) NDF
GPL14676_2007-01-30_chrXs_2_aw.pos.gz 3.0 Mb (ftp)(http) POS

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