GEO help: Mouse over screen elements for information.
Status
Public on Jul 01, 2012
Title
Agilent_024261 OGT_Streptococcus uberis_3780 features_8X15K_v1.0
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Streptococcus uberis 0140J Manufacturer
Oxford Gene Technology, Begbroke Science Park, Sandy Lane, Yarnton, Oxford, OX5 1PF, United Kingdom
Manufacture protocol
S. uberis 0140J DNA microarray encompassed the whole bacterial genome, composed of 3780 features, with optimised 60mer oligonucleotide probes printed in triplicate. Two separate probes were designed to match each individual gene determined from the S. uberis 0140J genome annotation with regions of homology discounted. Arrays were printed on glass microscope slides following described protocols (Hughes, Mao et al, Nature Biotechnol 2001, 9(4)342-7).
Description
DesignID : 024261
Submission date
Oct 24, 2011
Last update date
Jul 01, 2012
Contact name
Sharon Egan
E-mail(s)
sharon.egan@nottingham.ac.uk Organization name
University of Nottingham
Department
School of Veterinary Medicine and Sciences
Street address
Sutton Bonington Campus
City
Sutton Bonington
State/province
Leicestershire
ZIP/Postal code
LE125RD
Country
United Kingdom
Samples (12)
GSM821482 , GSM821483 , GSM821484 , GSM821485 , GSM821486 , GSM821487
Series (2)
GSE33186 Gene expression based analysis of Streptococcus uberis 0140J and vru (sub0144) mutant
GSE36677 Gene expression-based analysis of Streptococcus uberis 0140J and the MtuR (sub0472) mutant
Data table header descriptions ID FeatureNum
Row Location of probe
Column Location of probe
ProbeName Individual S. uberis gene and probe number combined
ORF ORF Name
SEQUENCE Sequence of oligonucleotide probe
SPOT_ID
Data table ID Row Column ProbeName ORF SEQUENCE SPOT_ID 1
1
1
GE_BrightCorner
--GE_BrightCorner
2
1
2
DarkCorner
--DarkCorner
3
1
3
DarkCorner
--DarkCorner
4
1
4
SUB1489_1
SUB1489 AACTATACCAGAAGTTTTACGTCCGTATATGGGCGGAGCAGAAATGATTTCTCCAAAGTA
5
1
5
SUB0921_1
SUB0921 ATACCAAATCGCTAAAAGAGGTATCCCTGTTAAACTTTATGAAATGCGTGGGGTTAAAGC
6
1
6
SUB1128_1
SUB1128 TTTTGATTGTAGATGACTTGTTAGCAACTGGAGGAACGGTCAAAGCCACTATTGAAATGG
7
1
7
SUB0538_2
SUB0538 GGATTGATCTGAAACAATATGGTCCAAATCCTCAAAAAGAGGAAGCTTTCCGACGTTATT
8
1
8
SUB0760_2
SUB0760 AGCATTATTGTTTACTGGTACCATAGAAGAGAACATCAAATATGGTAAAGAGCAAGCAAC
9
1
9
SUB0344_2
SUB0344 CTAATGAATGAAGGCAATGTAGTGGCAGATTTTGATAGTGACTTAATCGGTGACGGAAGT
10
1
10
SUB1784_2
SUB1784 AAATAATGCAATTTATACTTGCAATTACCGTGACTCTATTTGCAACTGTCGGTATGAAAA
11
1
11
SUB0993_2
SUB0993 TCGTTTAGTAGAAGGTGATCATAATATTGATTGTAAAATTGATGGTTTTGGTGCCATGAA
12
1
12
SUB0874_1
SUB0874 TAGTCAGGCAAATGCCGCGGCTTACATGGCTTTAATTGAATCAGGTGATACAGTCTTAGG
13
1
13
SUB0786_1
SUB0786 CGTAGAAGAATTACTAGGCTTTGAGTTACCTTTTGATAAAGAAAGGAACTTAAAGAATGG
14
1
14
SUB1398_1
SUB1398 CACTTGTTTTACTTATTCTGATTGCCTTGTCTGGAAGTATTTTGGGTGGAGAATTTTTAA
15
1
15
SUB1665_2
SUB1665 AAGTTATTCAGAGGGTAATGATCCAAACCGCTATGTGGTTGTCAGTCTTCAAAAACAATA
16
1
16
SUB1190_2
SUB1190 AAAGTTATACAGGAGGATTGCCTCTTTACCCGGTCAGTGAAAAACCGAAAAGAAGTGGGG
18
1
18
SUB1383_2
SUB1383 TAGCACAAGAATTCATCAGTAATACCTTAAAACATGCCAAAGCAAGTCAATTGGAAGTAT
19
1
19
SUB1787_1
SUB1787 ATCACAGTAGTGTCAAAGCATATAAGGACTCAGAAAAGAGATTGAAAGATCTTCCTCAAA
20
1
20
SUB1762_2
SUB1762 TTTAAGAGATGAACCTACAGACTGGGTTTCAAAATTCGGTGGGAATGCTTGGGCACCATT
21
1
21
SUB0436_1
SUB0436 TAGAAAATTTATCCATTAACTATGGTGCTATTGAGGCTGTTAAAGAGGTTTCTTTCCGTG
15120 1324 Kbytes .Supplementary data files not provided
Less...
More...