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Platform GPL14779 Query DataSets for GPL14779
Status Public on Aug 06, 2012
Title 2006-11-02_HG18_CpG_Promo
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description HG18
 
Submission date Oct 24, 2011
Last update date Aug 06, 2012
Contact name Hung-Cheng Lai
E-mail(s) hclai30656@gmail.com
Organization name Taipei Medical University
Department Department of Obstetrics and Gynecology, School of Medicine, College of Medicine,
Street address No.250, Wuxing St.
City Taipei
ZIP/Postal code 11031
Country Taiwan
 
Samples (6) GSM821488, GSM821489, GSM821490, GSM821491, GSM821492, GSM821493
Series (1)
GSE33187 MeDIP-chip from clinical cervical tissues in promoters

Data table header descriptions
ID The NimbleGen probe identifier. Used to identify a probe sequence within a design.
CHROMOSOME chromosome (hg18)
RANGE_GB GenBank Accession number
RANGE_START Position of the PROBE SEQUENCE in the sequence/region of interest, starting from the left/5' end.
RANGE_END
GENE_EXPR_OPTION The CONTAINER name from the design file, if analysis was done 'by container' or WHOLE ARRAY if all replicate probe sets were combined into a single set.
SEQ_ID The NimbleGen sequence identifier. Used to group the probe pairs together for determing gene expression summary values.
LENGTH
SEQUENCE probe sequence

Data table
ID CHROMOSOME RANGE_GB RANGE_START RANGE_END GENE_EXPR_OPTION SEQ_ID LENGTH SEQUENCE
CHR10P100017800 chr10 NC_000010.9 100017800 100017849 BLOCK1 chr10:100017797-100018797 50 ACTCACAGAGAGACAGAAGGACAGATGGGACAGCAAGAGGCAGACCAAGA
CHR10P100017910 chr10 NC_000010.9 100017910 100017959 BLOCK1 chr10:100017797-100018797 50 GGGCGCCGCGGCGGAGCAGCGCTAACGGGCTCCCTCCCCGGGCGCCCTGG
CHR10P100018002 chr10 NC_000010.9 100018002 100018051 BLOCK1 chr10:100017797-100018797 50 GCTGGCCGCGGAGGAGGCCCCGCAGGCCCCGCCCCGGGCGGGCCTGGAGT
CHR10P100018116 chr10 NC_000010.9 100018116 100018165 BLOCK1 chr10:100017797-100018797 50 GGCGCCCAGCCGCAGCCGGCGGGGCCGGGAAGTCCCGGGGGGCGGGGGGA
CHR10P100018200 chr10 NC_000010.9 100018200 100018249 BLOCK1 chr10:100017797-100018797 50 CTCTCGGGAAAGGGCGGCGCTGGGCCCGCGGCTGTTTTGCAGGGAGGGCC
CHR10P100018300 chr10 NC_000010.9 100018300 100018349 BLOCK1 chr10:100017797-100018797 50 AAGGTAATGACGCCCACCTAGAGTCCCAGTCTGTGAGTCCTGGTGGGTGC
CHR10P100018405 chr10 NC_000010.9 100018405 100018454 BLOCK1 chr10:100017797-100018797 50 GAATCTCACGAGCTCGGTCACTTAGGACAATGTAGACGCCCTTTCTGGGA
CHR10P100018500 chr10 NC_000010.9 100018500 100018549 BLOCK1 chr10:100017797-100018797 50 TGCTCTCCTGCAGGAACAGGCGAGTCACCCAGAGTTTACTGAATACCGCC
CHR10P100018611 chr10 NC_000010.9 100018611 100018660 BLOCK1 chr10:100017797-100018797 50 CTGAGCCCCAGGCGACATAACTTGCTCCTCCAGGCAATACACAGTGAATG
CHR10P100018716 chr10 NC_000010.9 100018716 100018765 BLOCK1 chr10:100017797-100018797 50 GGAGGAGGGTGTTAGTGCAGGGAGCAGGGACTGTAGAATTAAAGAAATGT
CHR10P100164743 chr10 NC_000010.9 100164743 100164792 BLOCK1 chr10:100164731-100165731 50 TTTACCACTTTACCTGCTCCTATCACCACCGCATCATACTCAGGCTTCAG
CHR10P100164838 chr10 NC_000010.9 100164838 100164887 BLOCK1 chr10:100164731-100165731 50 AGAGGCGGCCACAGCCTTGCAGAGACCTCGGCCACTTGCAGCCATTTCTG
CHR10P100164933 chr10 NC_000010.9 100164933 100164982 BLOCK1 chr10:100164731-100165731 50 TTTTGTGCTGCCCTAGGCACGGGGTGGAGCAGGGAGGAAGCAGGAAGAGG
CHR10P100165053 chr10 NC_000010.9 100165053 100165102 BLOCK1 chr10:100164731-100165731 50 TGGGGCTGTGCTGGGCCGTCGGGAGTGTTGCCTATTAACCAGGCGGTGTC
CHR10P100165148 chr10 NC_000010.9 100165148 100165197 BLOCK1 chr10:100164731-100165731 50 GGTTCCTATGTCAGGCTGGCATTGTGCTGAACCCTGTAGGCAAAACTCCC
CHR10P100165233 chr10 NC_000010.9 100165233 100165282 BLOCK1 chr10:100164731-100165731 50 AGGGAATGAGTGGTGGAGGCAGAGTGGAGCTCGAAAGGGCCCTCTCCTCC
CHR10P100165348 chr10 NC_000010.9 100165348 100165397 BLOCK1 chr10:100164731-100165731 50 TGCTCCAACTCCATGCTGAGTCTGCCAGTGCAGAGTGGTGATGCCTCTAC
CHR10P100165448 chr10 NC_000010.9 100165448 100165497 BLOCK1 chr10:100164731-100165731 50 CTTCAGACACCGCAGAGGCAGCTGTGTCTGTCGCTGAGGAGCACTGGAGT
CHR10P100165548 chr10 NC_000010.9 100165548 100165597 BLOCK1 chr10:100164731-100165731 50 TTCGCTGTCTGTAATTCTCTGGTGTTTTAGTTTTGAAGGCCTGGCCAGTT
CHR10P100165638 chr10 NC_000010.9 100165638 100165688 BLOCK1 chr10:100164731-100165731 51 AGGATTCGAGGTCACATCTGTAAATACCTCCAGCTAAAGTTCTTTCTGACC

Total number of rows: 381511

Table truncated, full table size 51287 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14779_2006-11-02_HG18_CpG_Promo.ndf.gz 24.6 Mb (ftp)(http) NDF
GPL14779_2006-11-02_HG18_CpG_Promo.pos.gz 3.5 Mb (ftp)(http) POS

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