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Status
Public on Nov 02, 2011
Title
Decode RNAi Viral Screening Library - Human GIPZ Lentiviral shRNAmir
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Open Biosystems
Manufacture protocol
See company website: http://www.openbiosystems.com/RNAi/shRNAmirLibraries/DecodeRNAiviralscreening/
Catalog number
RHS5337
Submission date
Nov 01, 2011
Last update date
Jan 18, 2013
Contact name
imai hiroo
E-mail(s)
imagen@idac.tohoku.ac.jp Phone
+81-22-717-8543
Fax
+81-22-717-8547
Organization name
tohoku university
Department
clinical oncology
Street address
4-1 seiryo-machi
City
sendai
State/province
Miyagi
ZIP/Postal code
980-8575
Country
Japan
Samples (5)
GSM825147 , GSM825148 , GSM825149 , GSM1477462 , GSM1477463 Series (2)
GSE33362 Human glioblastoma cells: Tet-on(mutant p53 R175H expression) vs Tet-off(p53-null)
GSE60382 LNCaP cells: shRNA library with bicalutamide
Data table header descriptions ID Oligo ID Catalog Number Vector Vector Type SPOT_ID GB_LIST All Human RNA Accessions Human Refseq RNA Accessions Human Genbank RNA Accessions Human Genbank EST Accessions Human Refseq Genomic Accessions Human Gene IDs Human Gene Symbols Human Gene Aliases Human Clusters Human GO Biological Process Human GO Cellular Component Human GO Molecular Function Human Gene Ontology IDs Human Gene Descriptions
Data table ID Oligo ID Catalog Number Vector Vector Type SPOT_ID GB_LIST All Human RNA Accessions Human Refseq RNA Accessions Human Genbank RNA Accessions Human Genbank EST Accessions Human Refseq Genomic Accessions Human Gene IDs Human Gene Symbols Human Gene Aliases Human Clusters Human GO Biological Process Human GO Cellular Component Human GO Molecular Function Human Gene Ontology IDs Human Gene Descriptions GE_BrightCorner
GE_BrightCorner
DarkCorner
DarkCorner
OBS_BC_207417
V2LHS_58484
RHS4430-98894836
pGIPZ
Lentiviral
NM_020657 BC111531 BC111532 EU446832 NM_020657 BC111531 BC111532 EU446832 NM_020657, BC111531, BC111532, EU446832
NM_020657
BC111531, BC111532, EU446832
-
NT_011109, NW_927284
57343
ZNF304
MGC129703, MGC129704
Hs.287374
transcription| regulation of transcription, DNA-dependent
intracellular| nucleus
nucleic acid binding| DNA binding| zinc ion binding| metal ion binding
GO:0006350, GO:0006355, GO:0005622, GO:0005634, GO:0003676, GO:0003677, GO:0008270, GO:0046872
zinc finger protein 304
OBS_BC_241066
V2LHS_236477
RHS4430-99620101
pGIPZ
Lentiviral
OBS_BC_241066
-
-
-
-
NW_001838867, NW_921618
-
-
-
-
-
-
-
-
-
OBS_BC_247591
V2LHS_116006
RHS4430-98850442
pGIPZ
Lentiviral
NM_016478 AF151050 AJ537494 AK001317 AK022373 AM393415 BC000190 BC011551 CR603577 CR607048 CR617545 CR618908 NM_016478 AF151050 AJ537494 AK001317 AK022373 AM393415 BC000190 BC011551 CR603577 CR607048 CR617545 CR618908 NM_016478, AF151050, AJ537494, AK001317, AK022373, AM393415, BC000190, BC011551, CR603577, CR607048, CR617545, CR618908
NM_016478
AF151050, AJ537494, AK001317, AK022373, AM393415, BC000190, BC011551, CR603577, CR607048, CR617545, CR618908
-
NW_001839071
51530
ZC3HC1
1110054L24Rik, HSPC216, NIPA
Hs.194157
ubiquitin cycle| cell cycle| mitosis| cell division
nucleus
zinc ion binding| protein kinase binding| metal ion binding
GO:0006512, GO:0007049, GO:0007067, GO:0051301, GO:0005634, GO:0008270, GO:0019901, GO:0046872
zinc finger, C3HC-type containing 1
OBS_BC_212826
V2LHS_219652
RHS4430-98817571
pGIPZ
Lentiviral
NM_003295 AK130847 AY117678 AY334563 BC003352 BC012431 BC022436 BC052333 CR457036 CR590628 CR591807 CR596782 CR600220 CR603315 CR606684 CR607344 CR609479 CR615436 CR617312 CR618209 CR619808 CR620037 CR623434 CR624492 CR624864 CR626086 CR626131 L13806 X16064 X64899 NM_003295 AK130847 AY117678 AY334563 BC003352 BC012431 BC022436 BC052333 CR457036 CR590628 CR591807 CR596782 CR600220 CR603315 CR606684 CR607344 CR609479 CR615436 CR617312 CR618209 CR619808 CR620037 CR623434 CR624492 CR624864 CR626086 CR626131 L13806 X16064 X64899 NM_003295, AK130847, AY117678, AY334563, BC003352, BC012431, BC022436, BC052333, CR457036, CR590628, CR591807, CR596782, CR600220, CR603315, CR606684, CR607344, CR609479, CR615436, CR617312, CR618209, CR619808, CR620037, CR623434, CR624492, CR624864, CR626086, CR626131, L13806, X16064, X64899
NM_003295
AK130847, AY117678, AY334563, BC003352, BC012431, BC022436, BC052333, CR457036, CR590628, CR591807, CR596782, CR600220, CR603315, CR606684, CR607344, CR609479, CR615436, CR617312, CR618209, CR619808, CR620037, CR623434, CR624492, CR624864, CR626086, CR626131, L13806, X16064, X64899
-
-
7178
TPT1
FLJ27337, HRF, p02, TCTP
Hs.374596
calcium ion transport| cellular calcium ion homeostasis| anti-apoptosis| regulation of apoptosis
extracellular space| cytoplasm| multivesicular body| tubulin complex
calcium ion binding| protein binding
GO:0006816, GO:0006874, GO:0006916, GO:0042981, GO:0045298, GO:0005615, GO:0005737, GO:0005771, GO:0005509, GO:0005515
tumor protein, translationally-controlled 1
OBS_BC_233314
V2LHS_42534
RHS4430-99168145
pGIPZ
Lentiviral
NM_001032364 NM_001032365 NM_005265 NM_013430 NM_080920 NM_178311 NM_178312 NM_199127 BC025927 BC035341 BC040904 BC065921 CR456494 J04131 J05235 L20490 L20491 L20492 L20493 M24087 M24903 X60069 X98922 NM_001032364 NM_001032365 NM_005265 NM_013430 NM_080920 NM_178311 NM_178312 NM_199127 BC025927 BC035341 BC040904 BC065921 CR456494 J04131 J05235 L20490 L20491 L20492 L20493 M24087 M24903 X60069 X98922 NM_001032364, NM_001032365, NM_005265, NM_013430, NM_080920, NM_178311, NM_178312, NM_199127, BC025927, BC035341, BC040904, BC065921, CR456494, J04131, J05235, L20490, L20491, L20492, L20493, M24087, M24903, X60069, X98922
NM_001032364, NM_001032365, NM_005265, NM_013430, NM_080920, NM_178311, NM_178312, NM_199127
BC025927, BC035341, BC040904, BC065921, CR456494, J04131, J05235, L20490, L20491, L20492, L20493, M24087, M24903, X60069, X98922
-
NG_000002, NG_005992, NT_011387, NT_011520, NW_001838659, NW_001838745, NW_927317, NW_927628
2678, 91227, 92086
GGT1, GGTLC2, GGTLC1
CD224, D22S672, D22S732, GGT, GTG, MGC96892, MGC96904, MGC96963, GGTL4, MGC96916, dJ831C21.2, GGTLA4, MGC50550
Hs.595809, Hs.645535, Hs.450000, Hs.632765, Hs.355394, Hs.450000
amino acid metabolic process| glutathione biosynthetic process| glutathione biosynthetic process
membrane| integral to membrane| cellular_component
molecular_function| gamma-glutamyltransferase activity| acyltransferase activity| transferase activity| gamma-glutamyltransferase activity| gamma-glutamyltransferase activity
GO:0006520, GO:0006750, GO:0016020, GO:0016021, GO:0016740, GO:0008415, GO:0003674, GO:0003840, GO:0006750, GO:0005575, GO:0003840, GO:0003840
gamma-glutamyltransferase 1| gamma-glutamyltransferase light chain 2| gamma-glutamyltransferase light chain 1
OBS_BC_243681
V2LHS_62587
RHS4430-98713814
pGIPZ
Lentiviral
NM_138575 XM_001713960 AK097688 BC008196 BC047906 EU249757 NM_138575 XM_001713960 AK097688 BC008196 BC047906 EU249757 NM_138575, XM_001713960, AK097688, BC008196, BC047906, EU249757
NM_138575, XM_001713960
AK097688, BC008196, BC047906, EU249757
-
NW_925428
192111
PGAM5
BXLBv68, MGC5352
Hs.102558
-
nucleus| cytoplasm
-
GO:0005634, GO:0005737
phosphoglycerate mutase family member 5
OBS_BC_233910
V2LHS_51806
RHS4430-99291764
pGIPZ
Lentiviral
OBS_BC_233910
-
-
-
-
-
-
-
-
-
-
-
-
-
-
OBS_BC_200296
V2LHS_205210
RHS4430-98902024
pGIPZ
Lentiviral
OBS_BC_200296
-
-
-
-
-
-
-
-
-
-
-
-
-
-
OBS_BC_224385
V2LHS_61285
RHS4430-99150437
pGIPZ
Lentiviral
OBS_BC_224385
-
-
-
-
NT_011757, NW_001842360, NW_927700
-
-
-
-
-
-
-
-
-
OBS_BC_239221
V2LHS_71646
RHS4430-99329758
pGIPZ
Lentiviral
NM_013240 NM_182749 AF139682 BC011554 CR612892 NM_013240 NM_182749 AF139682 BC011554 CR612892 NM_013240, NM_182749, AF139682, BC011554, CR612892
NM_013240, NM_182749
AF139682, BC011554, CR612892
-
NW_001838863, NW_927384
29104
N6AMT1
C21orf127, HEMK2, MGC19995, MTQ2, N6AMT, PRED28
Hs.163846
methylation
-
nucleic acid binding| methyltransferase activity| transferase activity
GO:0032259, GO:0003676, GO:0008168, GO:0016740
N-6 adenine-specific DNA methyltransferase 1 (putative)
OBS_BC_229029
V2LHS_78678
RHS4430-99140529
pGIPZ
Lentiviral
NM_203376 AY359081 BC061592 NM_203376 AY359081 BC061592 NM_203376, AY359081, BC061592
NM_203376
AY359081, BC061592
-
NW_001838533, NW_926128
388730
TMEM81
HC3107, KVLA2788, MGC75217, UNQ2788
Hs.146928
-
membrane| integral to membrane
-
GO:0016020, GO:0016021
transmembrane protein 81
OBS_BC_256701
V2LHS_65066
RHS4430-98486420
pGIPZ
Lentiviral
NM_152909 AK057494 EU446719 NM_152909 AK057494 EU446719 NM_152909, AK057494, EU446719
NM_152909
AK057494, EU446719
-
NT_011109, NW_001838501, NW_927284
7565, 147694
ZNF17, ZNF548
FLJ40864, FLJ46058, FLJ46615, HPF3, KIAA1947, KOX10, FLJ32932
Hs.710278, Hs.657353
transcription| regulation of transcription, DNA-dependent| transcription| regulation of transcription, DNA-dependent
intracellular| nucleus| intracellular| nucleus
DNA binding| zinc ion binding| metal ion binding| DNA binding| zinc ion binding| metal ion binding
GO:0006350, GO:0006355, GO:0005622, GO:0005634, GO:0008270, GO:0046872, GO:0003677, GO:0006350, GO:0006355, GO:0005622, GO:0005634, GO:0003677, GO:0008270, GO:0046872
zinc finger protein 17| zinc finger protein 548
OBS_BC_245686
V2LHS_236737
RHS4430-98708081
pGIPZ
Lentiviral
OBS_BC_245686
-
-
-
-
NT_010859, NW_926940
-
-
-
-
-
-
-
-
-
OBS_BC_214596
V2LHS_235325
RHS4430-98819504
pGIPZ
Lentiviral
OBS_BC_214596
-
-
-
-
NW_001838878, NW_921751
-
-
-
-
-
-
-
-
-
OBS_BC_235290
V2LHS_267074
RHS4430-99293275
pGIPZ
Lentiviral
NM_001257 BC028624 BC030653 DQ891713 DQ894890 EU190357 EU190358 L34058 U59288 NM_001257 BC028624 BC030653 DQ891713 DQ894890 EU190357 EU190358 L34058 U59288 NM_001257, BC028624, BC030653, DQ891713, DQ894890, EU190357, EU190358, L34058, U59288
NM_001257
BC028624, BC030653, DQ891713, DQ894890, EU190357, EU190358, L34058, U59288
-
-
1012
CDH13
CDHH
Hs.654386
positive regulation of endothelial cell proliferation| positive regulation of cell-matrix adhesion| sprouting angiogenesis| homophilic cell adhesion| negative regulation of cell adhesion| Rho protein signal transduction| negative regulation of cell proliferation| calcium-dependent cell-cell adhesion| Rac protein signal transduction| lamellipodium biogenesis| regulation of endocytosis| positive regulation of cell migration| regulation of epidermal growth factor receptor signaling pathway| endothelial cell migration| keratinocyte proliferation| positive regulation of survival gene product activity| positive regulation of smooth muscle cell proliferation| positive regulation of calcium-mediated signaling| positive regulation of positive chemotaxis| localization within membrane| low density lipoprotein mediated signaling
extracellular space| cytoplasm| plasma membrane| caveola| anchored to membrane| neuron projection
calcium ion binding| low-density lipoprotein binding| cadherin binding
GO:0001938, GO:0001954, GO:0002040, GO:0007156, GO:0007162, GO:0007266, GO:0008285, GO:0016339, GO:0016601, GO:0030032, GO:0030100, GO:0030335, GO:0042058, GO:0045885, GO:0048661, GO:0050850, GO:0050927, GO:0051668, GO:0055096, GO:0043542, GO:0043616, GO:0043005, GO:0031225, GO:0005615, GO:0005737, GO:0005886, GO:0005901, GO:0005509, GO:0030169, GO:0045296
cadherin 13, H-cadherin (heart)
OBS_BC_208144
V2LHS_236223
RHS4430-98895644
pGIPZ
Lentiviral
NR_002323 AB073661 CR594262 CR623819 D50525 BM461799 NR_002323 AB073661 CR594262 CR623819 D50525 NR_002323, AB073661, CR594262, CR623819, D50525, BM461799
NR_002323
AB073661, CR594262, CR623819, D50525
BM461799
NT_011520, NW_001838745
29793, 55000
TI-227H, TUG1
FLJ20618, MGC46067
Hs.554829
-
-
-
-
hypothetical protein TI-227H| taurine upregulated gene 1
OBS_BC_221539
V2LHS_254663
RHS4430-99147539
pGIPZ
Lentiviral
NM_001002914 AK056227 AY646650 BC019929 BC063604 NM_001002914 AK056227 AY646650 BC019929 BC063604 NM_001002914, AK056227, AY646650, BC019929, BC063604
NM_001002914
AK056227, AY646650, BC019929, BC063604
-
NT_010718, NW_001838403
147040
KCTD11
C17orf36, MGC129844, REN, REN/KCTD11
Hs.592112
regulation of cell growth| potassium ion transport| multicellular organismal development| nervous system development| cell differentiation| regulation of cell proliferation| negative regulation of cell cycle
voltage-gated potassium channel complex| membrane
voltage-gated potassium channel activity| protein binding
GO:0006813, GO:0007275, GO:0007399, GO:0001558, GO:0030154, GO:0042127, GO:0045786, GO:0008076, GO:0016020, GO:0005249, GO:0005515
potassium channel tetramerisation domain containing 11
OBS_BC_230106
V2LHS_229539
RHS4430-99141640
pGIPZ
Lentiviral
NM_001079877 NM_006989 XM_001718023 XM_001718200 XM_001724280 XM_001725215 XM_001725218 XM_001725602 AB011110 CR627444 NM_001079877 NM_006989 XM_001718023 XM_001718200 XM_001724280 XM_001725215 XM_001725218 XM_001725602 AB011110 CR627444 NM_001079877, NM_006989, XM_001718023, XM_001718200, XM_001724280, XM_001725215, XM_001725218, XM_001725602, AB011110, CR627444
NM_001079877, NM_006989, XM_001718023, XM_001718200, XM_001724280, XM_001725215, XM_001725218, XM_001725602
AB011110, CR627444
-
NT_007819, NW_001839004, NW_925788
10156, 401331, 100132214, 100133005, 100134584, 100134626, 100134722
RASA4, FLJ21767, LOC100132214, LOC100133005, LOC100134584, LOC100134626, LOC100134722
CAPRI, GAPL, KIAA0538, MGC131890, DKFZp781H1351
Hs.654726, Hs.632627, Hs.670011
intracellular signaling cascade| regulation of small GTPase mediated signal transduction| signal transduction| intracellular signaling cascade| regulation of small GTPase mediated signal transduction| intracellular signaling cascade| regulation of small GTPase mediated signal transduction
intracellular| cytoplasm| plasma membrane| intracellular| intracellular
GTPase activator activity| zinc ion binding| metal ion binding| GTPase activator activity| GTPase activator activity
GO:0007242, GO:0051056, GO:0005622, GO:0005737, GO:0005886, GO:0008270, GO:0046872, GO:0005096, GO:0007165, GO:0007242, GO:0051056, GO:0005622, GO:0005096, GO:0007242, GO:0051056, GO:0005622, GO:0005096
RAS p21 protein activator 4| hypothetical protein FLJ21767| similar to HSPC047 protein| similar to RAS p21 protein activator 4| hypothetical protein LOC100134584| similar to RAS p21 protein activator 4| similar to HSPC047 protein
58558 29798 Kbytes .Supplementary data files not provided
