NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL14841 Query DataSets for GPL14841
Status Public on Jun 16, 2012
Title Ecogenomis Medaka EG21000 CustomArray
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Oryzias latipes
Manufacturer Ecogenomis, Inc./CustomArray Inc.
Manufacture protocol http://www.customarrayinc.com/html/arrays.html
 
Description Japanese medaka
oligo DNA (35 to 40-mer)
20,960 spots were designated to Oryzias latipes (medaka fish) gene probes on this microarray. In addition, 351 negative control probes (derived from bacteria, plants, and bacteriophages) were spotted, and 66 factory QC probes were also spotted on the microarray. Therefore, signal data from total of 417 control spots were included in 21,377-spot data on the custom-designed Oryzias latipes 21K oligo DNA microarray.
 
Submission date Nov 04, 2011
Last update date Nov 04, 2011
Contact name Shosaku Kashiwada
E-mail(s) kashiwada@toyo.jp
Organization name Toyo University
Department Department of Life Sciences
Street address 1-1-1 Izumino
City Itakura-machi
State/province Ora-gun, Gunma
ZIP/Postal code 374-0193
Country Japan
 
Samples (6) GSM828429, GSM828430, GSM828431, GSM828432, GSM828433, GSM828434
Series (1)
GSE33488 Silver nano-colloids disrupt medaka embryogenesis through vital gene expressions

Data table header descriptions
ID
PROBE_TYPE Control probe identifier (Negative CTL and Factory QC probes)
PROBE_ID Probe Identification
ACCESSION Accession number in genbank database or Clone name in NBRP medaka full length cDNA library database (National Bio-Resource Project: www.shigen.nig.ac.jp/medaka/top/top.jsp)
SEQUENCE Probe Sequence
GENE_ANNOTATION Gene annotation (if there is any)
GB_ACC GenBank Accession number
SPOT_ID

Data table
ID PROBE_TYPE PROBE_ID ACCESSION SEQUENCE GENE_ANNOTATION GB_ACC SPOT_ID
C2-R4 medaka gene EG-Ol-0002 AY578182 TGTCATCATTATGTGGTCGAGTCAGCACTCCCTAC 11-beta-hydroxysteroid dehydrogenase type 3 (11-beta-HSD3) AY578182
C1-R151 medaka gene EG-Ol-0002 AY578182 TGTCATCATTATGTGGTCGAGTCAGCACTCCCTAC 11-beta-hydroxysteroid dehydrogenase type 3 (11-beta-HSD3) AY578182
C1-R4 medaka gene EG-Ol-0002 AY578182 TGTCATCATTATGTGGTCGAGTCAGCACTCCCTAC 11-beta-hydroxysteroid dehydrogenase type 3 (11-beta-HSD3) AY578182
C1-R5 medaka gene EG-Ol-0002 AY578182 TGTCATCATTATGTGGTCGAGTCAGCACTCCCTAC 11-beta-hydroxysteroid dehydrogenase type 3 (11-beta-HSD3) AY578182
C1-R73 medaka gene EG-Ol-0002 AY578182 TGTCATCATTATGTGGTCGAGTCAGCACTCCCTAC 11-beta-hydroxysteroid dehydrogenase type 3 (11-beta-HSD3) AY578182
C1-R78 medaka gene EG-Ol-0002 AY578182 TGTCATCATTATGTGGTCGAGTCAGCACTCCCTAC 11-beta-hydroxysteroid dehydrogenase type 3 (11-beta-HSD3) AY578182
C1-R82 medaka gene EG-Ol-0002 AY578182 TGTCATCATTATGTGGTCGAGTCAGCACTCCCTAC 11-beta-hydroxysteroid dehydrogenase type 3 (11-beta-HSD3) AY578182
C1-R83 medaka gene EG-Ol-0002 AY578182 TGTCATCATTATGTGGTCGAGTCAGCACTCCCTAC 11-beta-hydroxysteroid dehydrogenase type 3 (11-beta-HSD3) AY578182
C3-R3 medaka gene EG-Ol-0003 AY735171 TGTTGGTTTAGGCAAACGTAATGAGGCTCTTGGCC 1-28 complement component C3, partial cds [Fundulus heteroclitus] AY735171
C2-R151 medaka gene EG-Ol-0003 AY735171 TGTTGGTTTAGGCAAACGTAATGAGGCTCTTGGCC 1-28 complement component C3, partial cds [Fundulus heteroclitus] AY735171
C2-R5 medaka gene EG-Ol-0003 AY735171 TGTTGGTTTAGGCAAACGTAATGAGGCTCTTGGCC 1-28 complement component C3, partial cds [Fundulus heteroclitus] AY735171
C2-R73 medaka gene EG-Ol-0003 AY735171 TGTTGGTTTAGGCAAACGTAATGAGGCTCTTGGCC 1-28 complement component C3, partial cds [Fundulus heteroclitus] AY735171
C2-R78 medaka gene EG-Ol-0003 AY735171 TGTTGGTTTAGGCAAACGTAATGAGGCTCTTGGCC 1-28 complement component C3, partial cds [Fundulus heteroclitus] AY735171
C2-R82 medaka gene EG-Ol-0003 AY735171 TGTTGGTTTAGGCAAACGTAATGAGGCTCTTGGCC 1-28 complement component C3, partial cds [Fundulus heteroclitus] AY735171
C2-R83 medaka gene EG-Ol-0003 AY735171 TGTTGGTTTAGGCAAACGTAATGAGGCTCTTGGCC 1-28 complement component C3, partial cds [Fundulus heteroclitus] AY735171
C3-R2 medaka gene EG-Ol-0003 AY735171 TGTTGGTTTAGGCAAACGTAATGAGGCTCTTGGCC 1-28 complement component C3, partial cds [Fundulus heteroclitus] AY735171
C3-R80 medaka gene EG-Ol-0005 EF530597 TGAACTGTACTGTGCGAGCAAATTTGCCATCGAAG 17-beta hydroxysteroid dehydrogenase type 1 (HSD17B1), partial cds EF530597
C3-R4 medaka gene EG-Ol-0005 EF530597 TGAACTGTACTGTGCGAGCAAATTTGCCATCGAAG 17-beta hydroxysteroid dehydrogenase type 1 (HSD17B1), partial cds EF530597
C3-R5 medaka gene EG-Ol-0005 EF530597 TGAACTGTACTGTGCGAGCAAATTTGCCATCGAAG 17-beta hydroxysteroid dehydrogenase type 1 (HSD17B1), partial cds EF530597
C3-R73 medaka gene EG-Ol-0005 EF530597 TGAACTGTACTGTGCGAGCAAATTTGCCATCGAAG 17-beta hydroxysteroid dehydrogenase type 1 (HSD17B1), partial cds EF530597

Total number of rows: 21377

Table truncated, full table size 2585 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap