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GEO help: Mouse over screen elements for information. |
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Status |
Public on Nov 01, 2012 |
Title |
NimbleGen_Geobacter metallireducens DSM 7210-v1.0 [Design 533273] |
Technology type |
in situ oligonucleotide |
Distribution |
custom-commercial |
Organism |
Geobacter metallireducens |
Manufacturer |
NimbleGen |
Manufacture protocol |
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
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Description |
strain : Geobacter metallireducens DSM 7210
4-plex expression for Geobacter metallireducens DSM 7210; from http://www.ncbi.nlm.nih.gov/nuccore/NC_007517 and http://www.ncbi.nlm.nih.gov/nuccore/NC_007515; 3,627 starting genes; 9 probes per target, 45-60mer probes, 3557 exemplars for 3627 genes, 3 copies of each probe on the array.
Design ID : 533273
native array description file : 100622_ZS_Gmet_CS15_expr.ndf native array description file : 100622_ZS_Gmet_CS15_expr.ngd
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Submission date |
Nov 17, 2011 |
Last update date |
Nov 01, 2012 |
Contact name |
Tian Zhang |
E-mail(s) |
tzhang@microbio.umass.edu
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Phone |
413-577-1745
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Organization name |
University of Massachusetts
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Department |
Microbiology
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Lab |
Derek Lovley's Lab
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Street address |
639 North Pleasant St.
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City |
Amherst |
State/province |
MA |
ZIP/Postal code |
01003 |
Country |
USA |
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Samples (15)
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GSM835879, GSM835880, GSM835881, GSM835882, GSM835883, GSM835884
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Series (1) |
GSE33794 |
Anaerobic oxidation of benzene by Geobacter metallireducens |
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Data table header descriptions |
ID |
PROBE_DESIGN_ID, Nimblegen design reference with position ID |
PROBE_ID |
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ORF |
Locus_tag name of the ORF to which the indicated probe is directed. |
GENOME_ACC |
GenBank accession number of the Geobacter metallireducens DSM 7210 chromosome or of the resident plasmid pMET1. |
SEQUENCE |
Probe sequence |
Data table |
ID |
PROBE_ID |
ORF |
GENOME_ACC |
SEQUENCE |
533273_0133_0269 |
Gmet_0001P00001 |
Gmet_0001 |
NC_007517 |
ATGGAAGATGTTTGGCTCCAGGCACAATCCAATCTGGCCAAAGTGCTCACGCACCAGACC |
533273_0258_0244 |
Gmet_0001P00066 |
Gmet_0001 |
NC_007517 |
CACCTGGATAGAGCCGATCAGGTTCGCCGGAGCCCATAAGAATACTCTCCTCCTGGAGGC |
533273_0032_0442 |
Gmet_0001P00132 |
Gmet_0001 |
NC_007517 |
CCAGTTCATCAGGGACCGGGTCAGAGAGAGCTATCTTCCCATGATCCTCGAATCGGTCCG |
533273_0273_0291 |
Gmet_0001P00263 |
Gmet_0001 |
NC_007517 |
GCCCACGCAAAAGCCATACAGAGGATGAGCTCGGGCCCGTTGAGTCGGAAAAATGCGCGC |
533273_0220_0324 |
Gmet_0001P00348 |
Gmet_0001 |
NC_007517 |
CGCCAAGTATACCTTCGACACCTTTGTCTGCGGCGGGAGCAACCAGTTCGCCCATGCAGC |
533273_0314_0382 |
Gmet_0001P00549 |
Gmet_0001 |
NC_007517 |
CTACACCTCCGAGAAATTCATGAACGAGCTCATCAATTGCCTCCGTTACCAGAAGATGGA |
533273_0177_0019 |
Gmet_0001P00698 |
Gmet_0001 |
NC_007517 |
TTTTCCACACTTTCAACGCCCTCTACGAGTCACACAAGCAGATCGTGGTCACCTCGGACA |
533273_0082_0026 |
Gmet_0001P01116 |
Gmet_0001 |
NC_007517 |
CAAGGTGGCGGAGCTTAAGTCGGACAAGCGCCTCAAAGCGCTGGTGGTGCCACGCCAGAT |
533273_0051_0311 |
Gmet_0001P01291 |
Gmet_0001 |
NC_007517 |
CTCTCCCAGGATTTCGAGCTGAAAAGCACCATTGAGACCCTGCGCAAGGGGCTGTTGAAC |
533273_0216_0452 |
Gmet_0001P00001 |
Gmet_0001 |
NC_007517 |
ATGGAAGATGTTTGGCTCCAGGCACAATCCAATCTGGCCAAAGTGCTCACGCACCAGACC |
533273_0015_0313 |
Gmet_0001P00066 |
Gmet_0001 |
NC_007517 |
CACCTGGATAGAGCCGATCAGGTTCGCCGGAGCCCATAAGAATACTCTCCTCCTGGAGGC |
533273_0011_0313 |
Gmet_0001P00132 |
Gmet_0001 |
NC_007517 |
CCAGTTCATCAGGGACCGGGTCAGAGAGAGCTATCTTCCCATGATCCTCGAATCGGTCCG |
533273_0095_0133 |
Gmet_0001P00263 |
Gmet_0001 |
NC_007517 |
GCCCACGCAAAAGCCATACAGAGGATGAGCTCGGGCCCGTTGAGTCGGAAAAATGCGCGC |
533273_0032_0124 |
Gmet_0001P00348 |
Gmet_0001 |
NC_007517 |
CGCCAAGTATACCTTCGACACCTTTGTCTGCGGCGGGAGCAACCAGTTCGCCCATGCAGC |
533273_0240_0256 |
Gmet_0001P00549 |
Gmet_0001 |
NC_007517 |
CTACACCTCCGAGAAATTCATGAACGAGCTCATCAATTGCCTCCGTTACCAGAAGATGGA |
533273_0178_0358 |
Gmet_0001P00698 |
Gmet_0001 |
NC_007517 |
TTTTCCACACTTTCAACGCCCTCTACGAGTCACACAAGCAGATCGTGGTCACCTCGGACA |
533273_0031_0125 |
Gmet_0001P01116 |
Gmet_0001 |
NC_007517 |
CAAGGTGGCGGAGCTTAAGTCGGACAAGCGCCTCAAAGCGCTGGTGGTGCCACGCCAGAT |
533273_0262_0178 |
Gmet_0001P01291 |
Gmet_0001 |
NC_007517 |
CTCTCCCAGGATTTCGAGCTGAAAAGCACCATTGAGACCCTGCGCAAGGGGCTGTTGAAC |
533273_0273_0215 |
Gmet_0002P00035 |
Gmet_0002 |
NC_007517 |
GGGCTCTCCAGAAGATCCAGGGAATCGTCGAAAAGAGGAACACCATGCCGATCCTCTCCA |
533273_0138_0024 |
Gmet_0002P00081 |
Gmet_0002 |
NC_007517 |
GCCGATCCTCTCCAACGTCCTTATCGAGGCCCATGCCGATCGGATCGAGCTGACGGCCAC |
Total number of rows: 72037
Table truncated, full table size 8073 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL14898_100622_ZS_Gmet_CS15_expr.ndf.gz |
4.1 Mb |
(ftp)(http) |
NDF |
GPL14898_100622_ZS_Gmet_CS15_expr.ngd.gz |
84.0 Kb |
(ftp)(http) |
NGD |
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