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Platform GPL14898 Query DataSets for GPL14898
Status Public on Nov 01, 2012
Title NimbleGen_Geobacter metallireducens DSM 7210-v1.0 [Design 533273]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Geobacter metallireducens
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description strain : Geobacter metallireducens DSM 7210

4-plex expression for Geobacter metallireducens DSM 7210; from http://www.ncbi.nlm.nih.gov/nuccore/NC_007517 and http://www.ncbi.nlm.nih.gov/nuccore/NC_007515; 3,627 starting genes; 9 probes per target, 45-60mer probes, 3557 exemplars for 3627 genes, 3 copies of each probe on the array.

Design ID : 533273

native array description file : 100622_ZS_Gmet_CS15_expr.ndf
native array description file : 100622_ZS_Gmet_CS15_expr.ngd
 
Submission date Nov 17, 2011
Last update date Nov 01, 2012
Contact name Tian Zhang
E-mail(s) tzhang@microbio.umass.edu
Phone 413-577-1745
Organization name University of Massachusetts
Department Microbiology
Lab Derek Lovley's Lab
Street address 639 North Pleasant St.
City Amherst
State/province MA
ZIP/Postal code 01003
Country USA
 
Samples (15) GSM835879, GSM835880, GSM835881, GSM835882, GSM835883, GSM835884 
Series (1)
GSE33794 Anaerobic oxidation of benzene by Geobacter metallireducens

Data table header descriptions
ID PROBE_DESIGN_ID, Nimblegen design reference with position ID
PROBE_ID
ORF Locus_tag name of the ORF to which the indicated probe is directed.
GENOME_ACC GenBank accession number of the Geobacter metallireducens DSM 7210 chromosome or of the resident plasmid pMET1.
SEQUENCE Probe sequence

Data table
ID PROBE_ID ORF GENOME_ACC SEQUENCE
533273_0133_0269 Gmet_0001P00001 Gmet_0001 NC_007517 ATGGAAGATGTTTGGCTCCAGGCACAATCCAATCTGGCCAAAGTGCTCACGCACCAGACC
533273_0258_0244 Gmet_0001P00066 Gmet_0001 NC_007517 CACCTGGATAGAGCCGATCAGGTTCGCCGGAGCCCATAAGAATACTCTCCTCCTGGAGGC
533273_0032_0442 Gmet_0001P00132 Gmet_0001 NC_007517 CCAGTTCATCAGGGACCGGGTCAGAGAGAGCTATCTTCCCATGATCCTCGAATCGGTCCG
533273_0273_0291 Gmet_0001P00263 Gmet_0001 NC_007517 GCCCACGCAAAAGCCATACAGAGGATGAGCTCGGGCCCGTTGAGTCGGAAAAATGCGCGC
533273_0220_0324 Gmet_0001P00348 Gmet_0001 NC_007517 CGCCAAGTATACCTTCGACACCTTTGTCTGCGGCGGGAGCAACCAGTTCGCCCATGCAGC
533273_0314_0382 Gmet_0001P00549 Gmet_0001 NC_007517 CTACACCTCCGAGAAATTCATGAACGAGCTCATCAATTGCCTCCGTTACCAGAAGATGGA
533273_0177_0019 Gmet_0001P00698 Gmet_0001 NC_007517 TTTTCCACACTTTCAACGCCCTCTACGAGTCACACAAGCAGATCGTGGTCACCTCGGACA
533273_0082_0026 Gmet_0001P01116 Gmet_0001 NC_007517 CAAGGTGGCGGAGCTTAAGTCGGACAAGCGCCTCAAAGCGCTGGTGGTGCCACGCCAGAT
533273_0051_0311 Gmet_0001P01291 Gmet_0001 NC_007517 CTCTCCCAGGATTTCGAGCTGAAAAGCACCATTGAGACCCTGCGCAAGGGGCTGTTGAAC
533273_0216_0452 Gmet_0001P00001 Gmet_0001 NC_007517 ATGGAAGATGTTTGGCTCCAGGCACAATCCAATCTGGCCAAAGTGCTCACGCACCAGACC
533273_0015_0313 Gmet_0001P00066 Gmet_0001 NC_007517 CACCTGGATAGAGCCGATCAGGTTCGCCGGAGCCCATAAGAATACTCTCCTCCTGGAGGC
533273_0011_0313 Gmet_0001P00132 Gmet_0001 NC_007517 CCAGTTCATCAGGGACCGGGTCAGAGAGAGCTATCTTCCCATGATCCTCGAATCGGTCCG
533273_0095_0133 Gmet_0001P00263 Gmet_0001 NC_007517 GCCCACGCAAAAGCCATACAGAGGATGAGCTCGGGCCCGTTGAGTCGGAAAAATGCGCGC
533273_0032_0124 Gmet_0001P00348 Gmet_0001 NC_007517 CGCCAAGTATACCTTCGACACCTTTGTCTGCGGCGGGAGCAACCAGTTCGCCCATGCAGC
533273_0240_0256 Gmet_0001P00549 Gmet_0001 NC_007517 CTACACCTCCGAGAAATTCATGAACGAGCTCATCAATTGCCTCCGTTACCAGAAGATGGA
533273_0178_0358 Gmet_0001P00698 Gmet_0001 NC_007517 TTTTCCACACTTTCAACGCCCTCTACGAGTCACACAAGCAGATCGTGGTCACCTCGGACA
533273_0031_0125 Gmet_0001P01116 Gmet_0001 NC_007517 CAAGGTGGCGGAGCTTAAGTCGGACAAGCGCCTCAAAGCGCTGGTGGTGCCACGCCAGAT
533273_0262_0178 Gmet_0001P01291 Gmet_0001 NC_007517 CTCTCCCAGGATTTCGAGCTGAAAAGCACCATTGAGACCCTGCGCAAGGGGCTGTTGAAC
533273_0273_0215 Gmet_0002P00035 Gmet_0002 NC_007517 GGGCTCTCCAGAAGATCCAGGGAATCGTCGAAAAGAGGAACACCATGCCGATCCTCTCCA
533273_0138_0024 Gmet_0002P00081 Gmet_0002 NC_007517 GCCGATCCTCTCCAACGTCCTTATCGAGGCCCATGCCGATCGGATCGAGCTGACGGCCAC

Total number of rows: 72037

Table truncated, full table size 8073 Kbytes.




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Supplementary file Size Download File type/resource
GPL14898_100622_ZS_Gmet_CS15_expr.ndf.gz 4.1 Mb (ftp)(http) NDF
GPL14898_100622_ZS_Gmet_CS15_expr.ngd.gz 84.0 Kb (ftp)(http) NGD

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