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Platform GPL14965 Query DataSets for GPL14965
Status Public on Dec 06, 2011
Title NimbleGen Human 3x720k Whole Genome CGH [100718_HG18_WG_CGH_v3.1_HX3]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Roche NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Build: Hg18, NCBI 36
60mer probes.
 
Submission date Dec 06, 2011
Last update date Apr 12, 2012
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (348) GSM843863, GSM843864, GSM843865, GSM843866, GSM843867, GSM843868 
Series (17)
GSE34197 DNA Replication Timing is Maintained Genome-wide in Primary Human Myoblasts Independent of D4Z4 Contraction in FSH Muscular Dystrophy
GSE35483 Profiling DNA copy number alterations of myxofibrosarcomas with NimbleGen array CGH chips
GSE35740 Regeneration of comparative genomic hybridization oligonucleotide microarrays with dimethylurea

Data table header descriptions
ID PROBE_ID from .pos file
CHROMOSOME
RANGE_GB CHROMOSOME Accession.version
RANGE_START the start position relative to the RANGE_GB accession
RANGE_END the end position relative to the RANGE_GB accession
SEQUENCE

Data table
ID CHROMOSOME RANGE_GB RANGE_START RANGE_END SEQUENCE
CHR01FS000032108 chr1 NC_000001.9 32108 32167 ACTTTATTCAAGAGCCTATTGTGCAAGCATAAGTGGCTGAGTCAGGTTCTCAACTCTGCT
CHR01FS000036566 chr1 NC_000001.9 36566 36625 GCAATCATGTAGACATCCTGATTCCAGACAATGTGTCTGGAGGCAGGGTTTACAGGACTT
CHR01FS000037196 chr1 NC_000001.9 37196 37255 TGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTC
CHR01FS000038109 chr1 NC_000001.9 38109 38168 CATTCCCTCTGTATGCCATATTTGATAAAGCATTTGATAATCTTAGTCAATGCCTGGGCC
CHR01FS000039532 chr1 NC_000001.9 39532 39591 TGAAGTCAGGAGACACACATTCTATCTGATTTTCTACATTATCTGTTTGAAAAGGTTACC
CHR01FS000049283 chr1 NC_000001.9 49283 49342 TCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTC
CHR01FS000052308 chr1 NC_000001.9 52308 52367 TAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTC
CHR01FS000055650 chr1 NC_000001.9 55650 55709 AGTATTATGCTGGCAACAATTGTCGAGTCCTCCTCCTCACTCTTCTGGGCTAATTTGTTC
CHR01FS000059489 chr1 NC_000001.9 59489 59548 AACTTGCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGC
CHR01FS000060884 chr1 NC_000001.9 60884 60943 ATGACACATCCCAATCTTAACAGATGCTCATTTGGGATACTGTACTTGTGAGTGGAAGTG
CHR01FS000072260 chr1 NC_000001.9 72260 72319 TTCGAATACTCAAAAGTGCTTACATACAATGAAAAATTTGGAAATCCATAAGCATGGCCA
CHR01FS000241735 chr1 NC_000001.9 241735 241794 AAGCTTATGAAACAGTAGATGTGTGTATCTAGTACATAAGAGCTGAATGTCAATATATAT
CHR01FS000357503 chr1 NC_000001.9 357503 357562 AGCCCAGTTGGCTGGACCAATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTT
CHR01FS000389471 chr1 NC_000001.9 389471 389530 AGTCAGCTGAATAGAGATGTTTTGCTTAGTCTATGTAAAAGTATATTAATTTTATTGATA
CHR01FS000403676 chr1 NC_000001.9 403676 403735 GCAAGGACATGCAATGTGACTTCACTACTCCTTTCATCAAGAAAAGGAGCCTCTTGGTCG
CHR01FS000443361 chr1 NC_000001.9 443361 443420 ACACGTATATCGCTACGGTTACTAATTGTGTGCACCTAGCCCTGTAGCTGTGGTCATCTG
CHR01FS000530358 chr1 NC_000001.9 530358 530417 GCAAATTACAGCCACTAGGAAACGCTTTTCATTCATTCCGGGATGGCTGAAATGTAAGCA
CHR01FS000532718 chr1 NC_000001.9 532718 532777 TTCCTCCTCTTGAGTCTCATCTCGGAAAGAGGGAGCTGTCAGTCAGAGCTCAGGCCAAAC
CHR01FS000547649 chr1 NC_000001.9 547649 547708 CACTTCAGAGCTATGGGAACCAATGGAATTGGATCTAAGGTTTTGAGTTGGCTCTTGTGC
CHR01FS000553694 chr1 NC_000001.9 553694 553753 TGTGCCTACGGACATAATCTTTGAATTTGCTTTGTTTCTCGATGAATAACTTGGAAGCTA

Total number of rows: 719690

Table truncated, full table size 80322 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14965_100718_HG18_WG_CGH_v3.1_HX3.ndf.gz 41.0 Mb (ftp)(http) NDF
GPL14965_100718_HG18_WG_CGH_v3.1_HX3.pos.gz 5.4 Mb (ftp)(http) POS

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