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GEO help: Mouse over screen elements for information. |
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Status |
Public on Dec 06, 2011 |
Title |
NimbleGen Human 3x720k Whole Genome CGH [100718_HG18_WG_CGH_v3.1_HX3] |
Technology type |
in situ oligonucleotide |
Distribution |
custom-commercial |
Organism |
Homo sapiens |
Manufacturer |
Roche NimbleGen |
Manufacture protocol |
see manufacturer's web site www.nimblegen.com
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Description |
Build: Hg18, NCBI 36 60mer probes.
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Submission date |
Dec 06, 2011 |
Last update date |
Apr 12, 2012 |
Organization |
NimbleGen Systems, Inc. |
E-mail(s) |
geo@ncbi.nlm.nih.gov
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Phone |
608-218-7600
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URL |
http://www.nimblegen.com/
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Street address |
504 S. Rosa Road
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City |
Madison |
State/province |
WI |
ZIP/Postal code |
53719 |
Country |
USA |
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Samples (348)
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GSM843863, GSM843864, GSM843865, GSM843866, GSM843867, GSM843868
GSM843869, GSM874321, GSM874322, GSM874323, GSM874324, GSM874325, GSM874326, GSM874327, GSM874328, GSM874329, GSM874330, GSM874331, GSM874332, GSM874333, GSM874334, GSM874335, GSM874336, GSM874337, GSM874338, GSM874339, GSM874340, GSM874341, GSM874342, GSM874343, GSM874344, GSM874345, GSM874346, GSM874347, GSM874348, GSM951505, GSM951506, GSM951507, GSM951508, GSM951509, GSM951510, GSM951511, GSM951512, GSM951513, GSM951514, GSM951515, GSM951516, GSM951517, GSM951518, GSM951519, GSM951520, GSM951521, GSM951522, GSM951523, GSM951524, GSM951525, GSM951526, GSM951527, GSM951528, GSM951529, GSM951530, GSM951531, GSM951532, GSM951533, GSM951534, GSM1098532, GSM1223811, GSM1240859, GSM1292800, GSM1292801, GSM1292802, GSM1292803, GSM1292804, GSM1292805, GSM1292806, GSM1292807, GSM1292808, GSM1292809, GSM1292810, GSM1292811, GSM1292812, GSM1292813, GSM1292814, GSM1292815, GSM1292816, GSM1292817, GSM1292818, GSM1292819, GSM1292820, GSM1292821, GSM1292822, GSM1292823, GSM1331214, GSM1331215, GSM1548626, GSM1548627, GSM1548628, GSM1548629, GSM1548630, GSM1548631, GSM1548632, GSM1548633, GSM1548634, GSM1548635, GSM1548636, GSM1548637, GSM1548638, GSM1548639, GSM1548640, GSM1548641, GSM1548642, GSM1548643, GSM1548644, GSM1548645, GSM1548646, GSM1548647, GSM1548648, GSM1548649, GSM1548650, GSM1548651, GSM1548652, GSM2048911, GSM2048912, GSM2048913, GSM2048914, GSM2048915, GSM2048916, GSM2048917, GSM2048918, GSM2048919, GSM2048920, GSM2048921, GSM2048922, GSM2048923, GSM2048924, GSM2048925, GSM2048926, GSM2048927, GSM2048928, GSM2048929, GSM2048930, GSM2048931, GSM2048932, GSM2048933, GSM2048934, GSM2048935, GSM2048936, GSM2048937, GSM2048938, GSM2048939, GSM2048940, GSM2048941, GSM2048942, GSM2048943, GSM2048944, GSM2048945, GSM2048946, GSM2048947, GSM2048948, GSM2048949, GSM2048950, GSM2048951, GSM2048952, GSM2048953, GSM2048954, GSM2048955, GSM2048956, GSM2048957, GSM2048958, GSM2048959, GSM2048960, GSM2048961, GSM2048962, GSM2048963, GSM2048964, GSM2048965, GSM2048966, GSM2048967, GSM2048968, GSM2048969, GSM2048970, GSM2048971, GSM2048972, GSM2048973, GSM2048974, GSM2048975, GSM2048976, GSM2048977, GSM2048978, GSM2048979, GSM2048980, GSM2048981, GSM2048982, GSM2048983, GSM2048984, GSM2048985, GSM2048986, GSM2048987, GSM2048988, GSM2048989, GSM2048990, GSM2048991, GSM2048992, GSM2048993, GSM2048994, GSM2048995, GSM2048996, GSM2048997, GSM2048998, GSM2048999, GSM2049000, GSM2049001, GSM2049002, GSM2049003, GSM2049004, GSM2049005, GSM2049006, GSM2049007, GSM2049008, GSM2049009, GSM2049010, GSM2049011, GSM2049012, GSM2049013, GSM2049014, GSM2049015, GSM2049016, GSM2049017, GSM2049018, GSM2049019, GSM2049020, GSM2049021, GSM2049022, GSM2049023, GSM2049024, GSM2049025, GSM2049026, GSM2049027, GSM2049028, GSM2049029, GSM2049030, GSM2049031, GSM2049032, GSM2049033, GSM2049034, GSM2049035, GSM2049036, GSM2049037, GSM2049038, GSM2049039, GSM2049040, GSM2049041, GSM2049042, GSM2049043, GSM2049044, GSM2049045, GSM2049046, GSM2049047, GSM2049048, GSM2049049, GSM2049050, GSM2049051, GSM2049052, GSM2049053, GSM2049054, GSM2049055, GSM2049056, GSM2597090, GSM2597091, GSM2597092, GSM2597093, GSM2597094, GSM2597095, GSM2597096, GSM2597097, GSM2597098, GSM2597099, GSM2597100, GSM2597101, GSM2597102, GSM2597103, GSM2597104, GSM3736943, GSM3736945, GSM3736946, GSM3736947, GSM3736948, GSM3736949, GSM3736950, GSM3736951, GSM3736952, GSM3736953, GSM3736954, GSM3736955, GSM3736956, GSM3736957, GSM3736958, GSM3736959, GSM3736960, GSM3736961, GSM3736962, GSM3736963, GSM3736964, GSM3736965, GSM3736966, GSM3736967, GSM3736968, GSM3736969, GSM3736970, GSM3736971, GSM3736972, GSM3736973, GSM3736974, GSM3736975, GSM3736976, GSM3736977, GSM3736980, GSM3736981, GSM3736982, GSM3736983, GSM3736984, GSM3736985, GSM3736986, GSM3736987, GSM3736988, GSM3736991, GSM3736992, GSM3736997, GSM3736998, GSM3736999, GSM3737000, GSM3737001, GSM3737002, GSM3737003, GSM3737004, GSM3737005, GSM5609915, GSM5609916, GSM5609917, GSM5609918, GSM5609919, GSM5609920, GSM5609921, GSM5609922, GSM5609923, GSM5609924, GSM5609925, GSM5609926
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Series (17)
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GSE34197 |
DNA Replication Timing is Maintained Genome-wide in Primary Human Myoblasts Independent of D4Z4 Contraction in FSH Muscular Dystrophy |
GSE35483 |
Profiling DNA copy number alterations of myxofibrosarcomas with NimbleGen array CGH chips |
GSE35740 |
Regeneration of comparative genomic hybridization oligonucleotide microarrays with dimethylurea |
GSE38888 |
Lack of genetic heterogeneity at high-resolution aCGH between primary breast cancers and their paired lymph node metastases |
GSE50577 |
A large novel deletion downstream of PAX6 gene in a Chinese family with coloboma of iris |
GSE51237 |
Identification of CNA associated with bone metastatic breast cancer cells |
GSE51238 |
16q22-24 DNA amplification specifically predicts and mediates, through MAF gene, breast cancer bone metastasis. |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
GSE53429 |
Whole Genome CGH array on patients with acute myeloid leukemia-M5 (AML-M5) |
GSE55181 |
aCGH assay in a Chinese family with syndactyly type 1-c |
GSE63428 |
Distinct classes of genes behave as either drivers or dependents of replication timing switches (Replication-Timing). |
GSE77313 |
NOMO-1: A NOVEL GENE ALTERED IN COLORECTAL CANCER, MOSTLY WITHIN THE EARLY-ONSET SUBSET |
GSE98471 |
Alterations in DNA replication timing identify TP63 as a novel marker of progeroid diseases [Chip] |
GSE98475 |
Alterations in DNA replication timing identify TP63 as a novel marker of progeroid diseases |
GSE130372 |
Replication timing alterations in leukemia reflect stable clinically-relevant changes in genome architecture [Repli-Chip] |
GSE130374 |
Replication timing alterations in leukemia reflect stable clinically-relevant changes in genome architecture |
GSE185274 |
aCGH from cells derived from adult individuals with acute lymphoblastic leukemia |
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Data table header descriptions |
ID |
PROBE_ID from .pos file |
CHROMOSOME |
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RANGE_GB |
CHROMOSOME Accession.version |
RANGE_START |
the start position relative to the RANGE_GB accession |
RANGE_END |
the end position relative to the RANGE_GB accession |
SEQUENCE |
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Data table |
ID |
CHROMOSOME |
RANGE_GB |
RANGE_START |
RANGE_END |
SEQUENCE |
CHR01FS000032108 |
chr1 |
NC_000001.9 |
32108 |
32167 |
ACTTTATTCAAGAGCCTATTGTGCAAGCATAAGTGGCTGAGTCAGGTTCTCAACTCTGCT |
CHR01FS000036566 |
chr1 |
NC_000001.9 |
36566 |
36625 |
GCAATCATGTAGACATCCTGATTCCAGACAATGTGTCTGGAGGCAGGGTTTACAGGACTT |
CHR01FS000037196 |
chr1 |
NC_000001.9 |
37196 |
37255 |
TGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTC |
CHR01FS000038109 |
chr1 |
NC_000001.9 |
38109 |
38168 |
CATTCCCTCTGTATGCCATATTTGATAAAGCATTTGATAATCTTAGTCAATGCCTGGGCC |
CHR01FS000039532 |
chr1 |
NC_000001.9 |
39532 |
39591 |
TGAAGTCAGGAGACACACATTCTATCTGATTTTCTACATTATCTGTTTGAAAAGGTTACC |
CHR01FS000049283 |
chr1 |
NC_000001.9 |
49283 |
49342 |
TCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTC |
CHR01FS000052308 |
chr1 |
NC_000001.9 |
52308 |
52367 |
TAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTC |
CHR01FS000055650 |
chr1 |
NC_000001.9 |
55650 |
55709 |
AGTATTATGCTGGCAACAATTGTCGAGTCCTCCTCCTCACTCTTCTGGGCTAATTTGTTC |
CHR01FS000059489 |
chr1 |
NC_000001.9 |
59489 |
59548 |
AACTTGCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGC |
CHR01FS000060884 |
chr1 |
NC_000001.9 |
60884 |
60943 |
ATGACACATCCCAATCTTAACAGATGCTCATTTGGGATACTGTACTTGTGAGTGGAAGTG |
CHR01FS000072260 |
chr1 |
NC_000001.9 |
72260 |
72319 |
TTCGAATACTCAAAAGTGCTTACATACAATGAAAAATTTGGAAATCCATAAGCATGGCCA |
CHR01FS000241735 |
chr1 |
NC_000001.9 |
241735 |
241794 |
AAGCTTATGAAACAGTAGATGTGTGTATCTAGTACATAAGAGCTGAATGTCAATATATAT |
CHR01FS000357503 |
chr1 |
NC_000001.9 |
357503 |
357562 |
AGCCCAGTTGGCTGGACCAATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTT |
CHR01FS000389471 |
chr1 |
NC_000001.9 |
389471 |
389530 |
AGTCAGCTGAATAGAGATGTTTTGCTTAGTCTATGTAAAAGTATATTAATTTTATTGATA |
CHR01FS000403676 |
chr1 |
NC_000001.9 |
403676 |
403735 |
GCAAGGACATGCAATGTGACTTCACTACTCCTTTCATCAAGAAAAGGAGCCTCTTGGTCG |
CHR01FS000443361 |
chr1 |
NC_000001.9 |
443361 |
443420 |
ACACGTATATCGCTACGGTTACTAATTGTGTGCACCTAGCCCTGTAGCTGTGGTCATCTG |
CHR01FS000530358 |
chr1 |
NC_000001.9 |
530358 |
530417 |
GCAAATTACAGCCACTAGGAAACGCTTTTCATTCATTCCGGGATGGCTGAAATGTAAGCA |
CHR01FS000532718 |
chr1 |
NC_000001.9 |
532718 |
532777 |
TTCCTCCTCTTGAGTCTCATCTCGGAAAGAGGGAGCTGTCAGTCAGAGCTCAGGCCAAAC |
CHR01FS000547649 |
chr1 |
NC_000001.9 |
547649 |
547708 |
CACTTCAGAGCTATGGGAACCAATGGAATTGGATCTAAGGTTTTGAGTTGGCTCTTGTGC |
CHR01FS000553694 |
chr1 |
NC_000001.9 |
553694 |
553753 |
TGTGCCTACGGACATAATCTTTGAATTTGCTTTGTTTCTCGATGAATAACTTGGAAGCTA |
Total number of rows: 719690
Table truncated, full table size 80322 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL14965_100718_HG18_WG_CGH_v3.1_HX3.ndf.gz |
41.0 Mb |
(ftp)(http) |
NDF |
GPL14965_100718_HG18_WG_CGH_v3.1_HX3.pos.gz |
5.4 Mb |
(ftp)(http) |
POS |
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