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Platform GPL15011 Query DataSets for GPL15011
Status Public on Dec 15, 2011
Title Agilent-016475 Patkany genome 4x44K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Rattus norvegicus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16016475 or 2516475.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Dec 14, 2011
Last update date Jan 17, 2013
Contact name Omar Abdul-Rahman
E-mail(s) abdulhun2000@yahoo.com
Organization name Semmelweis University
Department Department of Medical Chemistry, Molecular Biology and Pathobiochemistry
Lab Sasvari lab
Street address Tüzoltó utca 37-47
City Budapest
ZIP/Postal code 1094
Country Hungary
 
Samples (27) GSM849372, GSM849373, GSM849374, GSM849375, GSM849376, GSM849377 
Series (1)
GSE34451 Altered gene expression profiles in the hippocampus and prefrontal cortex of type 2 diabetic rats

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 A_42_P756696 A_42_P756696 FALSE DV727169 Rn.18066 gb|DV727169|tc|TC604346|tc|TC627905|gb|BG671389 chr10:15966235-15966176 rn|10q12 RVL19622 Wackym-Soares normalized rat vestibular cDNA library Rattus norvegicus cDNA 5', mRNA sequence [DV727169] TGAAGAGTCGAATCTTCTGTTAAAAGGTGATTTAAAACTTGAATGTGATGAATTGTGGCG
13 266 146 A_44_P348157 A_44_P348157 FALSE NM_019169 NM_019169 29219 Snca synuclein, alpha (non A4 component of amyloid precursor) Rn.1827 ENSRNOT00000068298 ref|NM_019169|ens|ENSRNOT00000068298|ens|ENSRNOT00000042485|ens|ENSRNOT00000039247 chr4:89721543-89721484 rn|4q24 Rattus norvegicus synuclein, alpha (non A4 component of amyloid precursor) (Snca), mRNA [NM_019169] GO:0000287(magnesium ion binding)|GO:0001774(microglial cell activation)|GO:0001921(positive regulation of receptor recycling)|GO:0001933(negative regulation of protein phosphorylation)|GO:0001956(positive regulation of neurotransmitter secretion)|GO:0001963(synaptic transmission, dopaminergic)|GO:0005504(fatty acid binding)|GO:0005509(calcium ion binding)|GO:0005515(protein binding)|GO:0005543(phospholipid binding)|GO:0005624(membrane fraction)|GO:0005625(soluble fraction)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005739(mitochondrion)|GO:0005792(microsome)|GO:0005829(cytosol)|GO:0005856(cytoskeleton)|GO:0005886(plasma membrane)|GO:0005938(cell cortex)|GO:0006631(fatty acid metabolic process)|GO:0006638(neutral lipid metabolic process)|GO:0006644(phospholipid metabolic process)|GO:0006916(anti-apoptosis)|GO:0006919(activation of caspase activity)|GO:0007006(mitochondrial membrane organization)|GO:0008017(microtubule binding)|GO:0008021(synaptic vesicle)|GO:0008198(ferrous iron binding)|GO:0008270(zinc ion binding)|GO:0008344(adult locomotory behavior)|GO:0010040(response to iron(II) ion)|GO:0010517(regulation of phospholipase activity)|GO:0010642(negative regulation of platelet-derived growth factor receptor signaling pathway)|GO:0014048(regulation of glutamate secretion)|GO:0014059(regulation of dopamine secretion)|GO:0015629(actin cytoskeleton)|GO:0016044(cellular membrane organization)|GO:0019717(synaptosome)|GO:0019894(kinesin binding)|GO:0019899(enzyme binding)|GO:0019904(protein domain specific binding)|GO:0030424(axon)|GO:0030426(growth cone)|GO:0030544(Hsp70 protein binding)|GO:0030659(cytoplasmic vesicle membrane)|GO:0031092(platelet alpha granule membrane)|GO:0031115(negative regulation of microtubule polymerization)|GO:0031623(receptor internalization)|GO:0032026(response to magnesium ion)|GO:0032410(negative regulation of transporter activity)|GO:0032496(response to lipopolysaccharide)|GO:0032769(negative regulation of monooxygenase activity)|GO:0033138(positive regulation of peptidyl-serine phosphorylation)|GO:0034341(response to interferon-gamma)|GO:0034599(cellular response to oxidative stress)|GO:0035067(negative regulation of histone acetylation)|GO:0040012(regulation of locomotion)|GO:0042393(histone binding)|GO:0042416(dopamine biosynthetic process)|GO:0042417(dopamine metabolic process)|GO:0042493(response to drug)|GO:0042775(mitochondrial ATP synthesis coupled electron transport)|GO:0042802(identical protein binding)|GO:0043014(alpha-tubulin binding)|GO:0043027(caspase inhibitor activity)|GO:0043030(regulation of macrophage activation)|GO:0043154(negative regulation of caspase activity)|GO:0043195(terminal button)|GO:0043205(fibril)|GO:0043274(phospholipase binding)|GO:0043523(regulation of neuron apoptosis)|GO:0043524(negative regulation of neuron apoptosis)|GO:0043679(axon terminus)|GO:0045502(dynein binding)|GO:0045807(positive regulation of endocytosis)|GO:0045920(negative regulation of exocytosis)|GO:0045963(negative regulation of dopamine metabolic process)|GO:0046928(regulation of neurotransmitter secretion) AAGATACATCTTTAGCCATGGATGTGTTCATGAAAGGACTTTCAAAGGCCAAGGAGGGAG
14 266 144 A_44_P269457 A_44_P269457 FALSE NM_080411 NM_080411 140595 Gpr83 G protein-coupled receptor 83 Rn.63075 ENSRNOT00000041629 ref|NM_080411|ens|ENSRNOT00000041629|ens|ENSRNOT00000044945|ens|ENSRNOT00000049371 chr8:11659161-11659220 rn|8q11 Rattus norvegicus G protein-coupled receptor 83 (Gpr83), mRNA [NM_080411] GO:0004872(receptor activity)|GO:0004930(G-protein coupled receptor activity)|GO:0004983(neuropeptide Y receptor activity)|GO:0016021(integral to membrane)|GO:0051384(response to glucocorticoid stimulus) AGCCTGAGTTTTTCCAATATGCTGCAAAGTGTGCTTTATTGTGAGTCACCATAGGCGCAA
15 266 142 A_44_P605884 A_44_P605884 FALSE XM_001066615 XM_001066615 502113 RGD1561563 similar to RIKEN cDNA 1700013B16 Rn.198322 ref|XM_001066615|ref|XM_225147|ref|XM_002725227 chr17:10858946-10858887 rn|17p14 PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700013B16 (RGD1561563), mRNA [XM_001066615] CTCCCCAGCACTGACACCTAAGAGTCAGCCTCTGGAAAATCAGTTCCCCAACCAGGTGAA
16 266 140 A_44_P468737 A_44_P468737 FALSE NM_001108424 NM_001108424 361296 Rnf125 ring finger protein 125 Rn.163367 ENSRNOT00000021136 ref|NM_001108424|ens|ENSRNOT00000021136|gb|FQ209520|gb|BC162061 chr18:12738172-12741880 rn|18p12 Rattus norvegicus ring finger protein 125 (Rnf125), mRNA [NM_001108424] GO:0005622(intracellular)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding) TAGCCAAGAGGATGAAGTCAGAATACCAGAACTGTACTGAGTGTGGAACTCTGGTCTGCC
17 266 138 A_44_P302087 A_44_P302087 FALSE NM_001100846 NM_001100846 309255 Mtmr10 myotubularin related protein 10 Rn.3510 ENSRNOT00000021530 ref|NM_001100846|ens|ENSRNOT00000021530|gb|BC083868|tc|TC584248 chr1:118764901-118764960 rn|1q22 Rattus norvegicus myotubularin related protein 10 (Mtmr10), mRNA [NM_001100846] GO:0016791(phosphatase activity) GGATCCATACTTCAGGACAATTACTGGATTTCAGAGTCTGGTACAGAAGGAGTGGGTCAT
18 266 136 NA NA ignore
19 266 134 A_43_P11962 A_43_P11962 FALSE NM_019173 NM_019173 29235 Galr3 galanin receptor 3 Rn.30069 ENSRNOT00000014349 ref|NM_019173|ens|ENSRNOT00000014349|gb|AF031522|gb|AF079844 chr7:117015319-117015378 rn|7q34 Rattus norvegicus galanin receptor 3 (Galr3), mRNA [NM_019173] GO:0004872(receptor activity)|GO:0004930(G-protein coupled receptor activity)|GO:0004966(galanin receptor activity)|GO:0005886(plasma membrane)|GO:0007193(inhibition of adenylate cyclase activity by G-protein signaling pathway)|GO:0007218(neuropeptide signaling pathway)|GO:0016021(integral to membrane)|GO:0030818(negative regulation of cAMP biosynthetic process) GGGGCTTTCGTGTGCAAGACGGTACATCTGCTCATCTACCTCACCATGTATGCCAGCAGC
20 266 132 A_44_P488234 A_44_P488234 FALSE BI303289 Rn.14733 gb|BI303289|gb|BM384139 chr13:076597713-076597654 rn|13q22 BI303289 UI-R-DQ0-ciz-n-19-0-UI.s1 UI-R-DQ0 Rattus norvegicus cDNA clone UI-R-DQ0-ciz-n-19-0-UI 3', mRNA sequence [BI303289] ATAAAATGGAACGGTTGTAAAGGTGATATCACTTTGTATCATTTGGCAGAATCACCACAT

Total number of rows: 45220

Table truncated, full table size 21045 Kbytes.




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