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Platform GPL15171 Query DataSets for GPL15171
Status Public on Jan 01, 2014
Title Agilent-017910 pseudoobscura_v2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila pseudoobscura
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description D. pseudoobscura GLEAN predictions new design
Arrays of this design have barcodes that begin with 16017910 or 2517910.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 30, 2012
Last update date Jan 01, 2014
Contact name Göran Arnqvist
Organization name Uppsala University
Department Ecology and Genetics
Street address Norbyvägen 18D
City Uppsala
ZIP/Postal code 752 36
Country Sweden
 
Samples (36) GSM867680, GSM867681, GSM867682, GSM867683, GSM867684, GSM867685 
Series (1)
GSE35410 Gene expression divergence in experimentally evolved Drosophila pseudoobscura females

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 Dp_18497_3 Dp_18497_3 FALSE unmapped AACATAAAGAACTCGGTAGCAGTGCGTCGGACATTTGGTATTGAAGATTCAGAGGCGTAG
13 266 146 Dp_00173_3PER Dp_00173_3PER FALSE unmapped CATACGGAGTCCTATCCAAGCATTAATGAGGCGTATTCGAGACAGACCGGCGCCTAACAA
14 266 144 Dp_03654_13 Dp_03654_13 FALSE unmapped GAAAAAACGCGCCAGTATTCGCGCATTTCGTGTCTGCAAAAAGAACTGAGTGAACTACAG
15 266 142 Dp_13213_2 Dp_13213_2 FALSE unmapped ATGTATGGGAATCCGCATGACTATGCAGCTGCTGCTGTCCCGACGCCCGAGCTATATCCA
16 266 140 NA NA ignore
17 266 138 Dp_04492_2 Dp_04492_2 FALSE unmapped TGATGATGACCATCGCGATGGCTTCACCAAGTGGCCCTTCATGACCACTCATTCCTGGGG
18 266 136 Dp_11996_5 Dp_11996_5 FALSE unmapped TTCCTACGAGCGCCGTCGCAACAGGCAGCAGCCGACATTCAAAAAGAGCGCTTTCGACAA
19 266 134 Dp_13771_3 Dp_13771_3 FALSE unmapped GCGACCATTATGAGGGAACTGCGCGCTGTTGAGCACCAGACAAGAGTCCAGTTAGTCTAA
20 266 132 Dp_01634_1 Dp_01634_1 FALSE unmapped ATCCACCAACCCATCAAGGTCGGGTTCTCCAAGCCATTACAAGCCCCCAAAATTATTTGA

Total number of rows: 45220

Table truncated, full table size 4623 Kbytes.




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Supplementary data files not provided
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