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Platform GPL15195 Query DataSets for GPL15195
Status Public on Feb 08, 2012
Title University of Texas UTHSC-H Candida albicans v2.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Candida albicans
Manufacturer Microarrays Inc., Huntsville, AL
Manufacture protocol 70-mer oligonucleotide set from Qiagen was printed on glass slides.
 
 
Submission date Feb 07, 2012
Last update date Feb 08, 2012
Contact name Ameeta Agarwal
E-mail(s) aagarwal@olemiss.edu
Phone 662-915-1218
Organization name University of Mississippi
Department National Center for Natural Products Research
Street address NCNPR, Room 2049
City University
State/province MS
ZIP/Postal code 38677
Country USA
 
Samples (6) GSM871555, GSM871556, GSM871557, GSM871558, GSM871559, GSM871560
Series (1)
GSE35604 Gene expression response to the antifungal compound 6-Nonadecynoic acid (6-NDA) in Saccharomyces cerevisiae and Candida albicans

Data table header descriptions
ID Unique ID for each spot on the array
BLOCK Array block number
COLUMN Array column number
ROW Array row number
OLIGO_ID Oligonucleotide ID
GENE NAME Gene name
ACCESSIONS ORF number
ORF ORF number
DESCRIPTION Gene description
SEQUENCE probe sequence
SPOT_ID

Data table
ID BLOCK COLUMN ROW OLIGO_ID GENE NAME ACCESSIONS ORF DESCRIPTION SEQUENCE SPOT_ID
1 1 1 1 CA00750_01 orf19.1789 orf19.1789 Predicted ORF in Assemblies 19, 20 and 21 TATTCAATCGATTGTTCAATAACAATCCACAATCTATGGACCACCAAGTTTATACTATTGCCTTGAATTT
2 1 2 1 CA00752_01 ACH1 orf19.3171 orf19.3171 Soluble protein in hyphae; similar to S. cerevisiae Ach1p, which is acetyl-coA hydrolase required for acetate utilization; nonessential; antigenic in human; induced on polystyrene adherence; ketoconazole-induced; no human or murine homolog GAACACCCCAGTTGAAGTTGATATCTATGGTCATGCCAATTCTACCAATGTCATGGGATCAAGAATGTTG
3 1 3 1 CA00755_01 AAACATAGTGCAATTGTTTGGTAGTGGCACCAAGAGCAATATTGTACAAAATGACATCTCTATCGTTGAA
4 1 4 1 CA00757_01 SNU114 orf19.144 orf19.144 Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Snu114p, which is an RNA helicase involved in pre-mRNA splicing CAACAACAACAACGACGTGGTGAAATTGATACTGTAACCCCAATACCAGGAACACCTTTATTTTCTATTA
5 1 5 1 CA00772_01 SPR3 orf19.1524 orf19.1524 Septin; mutant has no obvious phenotype GCTGTTTGGAAGGTAAACGAGCAGAATTGCAAGTTTTTGTTAACAACTATGAATCATCAAACTTTGGAAA
6 1 6 1 CA11011_01 GAATTGTCATCATATAATCAGAGCAGTGAATCCCAATTATTGATGATGAATAAATTCATTGATACAATTA
7 1 7 1 CA00777_01 orf19.1351 orf19.1351 Predicted ORF in Assemblies 19, 20 and 21 ATTACTTTTGGTAAACATGGAAAACTTAGGACAGAGCGACTCCATTTTTACAAATGTTTTATTTGTATAA
8 1 8 1 CA00780_01 orf19.1656 orf19.1656 Predicted ORF in Assemblies 19, 20 and 21 TCAGTATCTGCCTCAGTATCAATATCAGGTACAAGTACAGAATCAGAACCGGATTCGGAATCAAATATCG
9 1 9 1 CA00795_01 orf19.1859 orf19.1859 Predicted ORF from Assembly 19; removed from Assembly 20 TGCAATTGCAGAAAACAACCCCCCTGATACTGACACATCTACCAAAGAAAACGACAAAAACCCCAAAAAA
10 1 10 1 CA00798_01 EMC9 orf19.1907 orf19.1907 Protein not essential for viability, induced during the mating process CTCTATTGAGTTGCTCAAAAACAAAATCTCAAAGAACCGTCAGGGCAATGATAATCGTATTTTTGGAAAG
11 1 11 1 CA00465_01 orf19.140 orf19.140 Predicted ORF from Assembly 19; possibly spurious ORF (Annotation Working Group prediction); removed from Assembly 20 TCCTCAGGTTTCTTCCTTCTTTTCGTTAATCCTTGCGTCACTCTCTATAAACCATCCCTCTCACCGTTCT
12 1 12 1 CA00803_01 DDC1 orf19.245 orf19.245 Transcription is induced during filamentous growth; regulated by Nrg1p, Tup1p CAAACAGTTTCTTGAAATGGTCCCTGCATCTGCTGAAGATTTCAAAATAGATATCAAGAGTGAAAGAATA
13 1 13 1 CA00816_01 SAC6 orf19.5544 orf19.5544 Transcription is regulated by Nrg1p and Mig1p ACGAAGAGAAATATGCAAATGCCAAATTGGCCATTTCTATTGCAAGAAAATTAGGAGCTTTGATCTGGTT
14 1 14 1 CA00819_01 orf19.5755 orf19.5755 Predicted ORF in Assemblies 19, 20 and 21 TGATAATAATGGGTTTAGTATGGATGGAAGTTCTTCACCTCATTTAAAAAGAAGGTATAGTAAAGATTAA
15 1 15 1 CA00822_01 orf19.1508 orf19.1508 Predicted ORF in Assemblies 19, 20 and 21 TCAAACTCAAACTCAAACCCCGTTCCCCTTCATCATCTCATCCCATTCAATTGTTTGGTTTGTTAATTTT
16 1 16 1 CA00825_01 orf19.1225 orf19.1225 Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) CTCCTACTCCCACTAATAAAGATAAGAAGCAAAGAGAACTAGATGGAAGTAGTACTGATATAGAGTTGAA
17 1 17 1 CA01108_01 SAP99 orf19.853 orf19.853 Putative secreted aspartyl protease; possible Kex2p substrate; transcriptionally regulated by iron; expression greater in low iron; repressed in response to alpha pheromone in SpiderM medium TTTGGAGGGTGATTTGTTTGGACTTGCTAGTTTAAAAAACACCACCGAAACCAACATCAAACTGTTTTAA
18 1 18 1 CA01111_01 IFK2 orf19.856 orf19.856 Protein not essential for viability GATTACACATTTCCCAAATTATAAAGATTTAGTATATGAGCCATTAAACGAAGACAAAAAGAGGAGATGA
19 1 19 1 CA01114_01 AAAAGGGGATTTACCACGAATTGGTTATCTTTGTGTTGGTTGAAGGATATTTTTGTTCCCCAAGTAAAAG
20 1 1 2 CA01117_01 YUH2 orf19.3930 orf19.3930 Predicted ORF in Assemblies 19, 20 and 21; described as similar to ubiquitin carboxyl-terminal hydrolases CAAAGATGATGGATTATTTCATTTTGTAGGGTACATTTTCAAACAGGGGAAAATCTATGAATTGGATGGG

Total number of rows: 18240

Table truncated, full table size 3210 Kbytes.




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