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Platform GPL15224 Query DataSets for GPL15224
Status Public on Sep 01, 2012
Title 081014_Styp_LT2_EXP_X4
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Manufacturer Nimblegen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description NimbleGen design name 081014_Styp_LT2_EXP_X4, NimbleGen design ID 081014. An expression design for 4,504 genes from Salmonella typhimurium LT2 with seven 45 to 60-mer probe pairs per gene. Each probe is replicated twice.
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
 
Submission date Feb 13, 2012
Last update date Sep 01, 2012
Contact name Dawn E Hancock
E-mail(s) dawn.hancock@usace.army.mil
Phone 6016343711
Organization name DEPARTMENT OF DEFENSE Army Corps of Engineers
Department Engineer Research and Development Center
Lab Environmental Lab
Street address 3909 Halls Ferry Road
City Vicksburg
State/province Mississippi
ZIP/Postal code 39180
Country USA
 
Samples (6) GSM874410, GSM874411, GSM874412, GSM874413, GSM874414, GSM874415
Series (1)
GSE35750 Expression analysis of Salmonella typhimurium LT2 TA100 upon exposure to C60

Data table header descriptions
ID
ORF
SECONDARY_NAME
ACCESSION
GI
FUNCTION
RANGE_GB
MAPLOC
DESCRIPTION
COMMENTS

Data table
ID ORF SECONDARY_NAME ACCESSION GI FUNCTION RANGE_GB MAPLOC DESCRIPTION COMMENTS
PSLT001080700000001 PSLT001 GI:17233404;GeneID:1256238 NC_003277 17233403 putative cytoplasmic protein NC_003277 94-378 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT002080700000002 PSLT002 GI:17233405;GeneID:1256237 NC_003277 17233403 putative phospholipase D NC_003277 712-1155 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT003080700000003 PSLT003 GI:17233406;GeneID:1256235 NC_003277 17233403 replication protein NC_003277 1334-1600 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT004080700000004 PSLT004 GI:17233407;GeneID:1256236 NC_003277 17233403 DNA replication protein NC_003277 1723-1845 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT005080700000005 PSLT005 GI:17233408;GeneID:1256234 NC_003277 17233403 plasmid replication control protein NC_003277 1850-1927 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT006080700000006 PSLT006 GI:17233409;GeneID:1256233 NC_003277 17233403 replication protein NC_003277 1908-2789 RepA Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT007080700000007 PSLT007 GI:17233410;GeneID:1256232 NC_003277 17233403 putative outer membrane protein NC_003277 3730-3870 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT008080700000008 PSLT008 GI:17233473;GeneID:1256231 NC_003277 17233403 putative regulatory protein NC_003277 3967-4725 sdiA-regulated gene; putative bacterial helix-turn-helix proteins; member of araC family; rcK Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT009080700000009 PSLT009 GI:17233474;GeneID:1256230 NC_003277 17233403 resistance to complement killing NC_003277 4992-5549 srgB Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT010080700000010 PSLT010 GI:17233475;GeneID:1256228 NC_003277 17233403 putative outer membrane protein NC_003277 5639-6538 sdiA-regulated gene; srgA Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT011080700000011 PSLT011 GI:17233476;GeneID:1256229 NC_003277 17233403 putative thiol-disulfide isomerase or thioredoxin NC_003277 6671-7324 sdiA-regulated gene; orf7 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT012080700000012 PSLT012 GI:17233477;GeneID:1256227 NC_003277 17233403 putative regulatory protein NC_003277 7569-7919 luxR family; pefI Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT013080700000013 PSLT013 GI:17233478;GeneID:1256226 NC_003277 17233403 regulator NC_003277 7904-8116 plasmid-encoded fimbriae; orf6 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT014080700000014 PSLT014 GI:17233479;GeneID:1256224 NC_003277 17233403 putative outer membrane protein NC_003277 8548-9423 orf5 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT015080700000015 PSLT015 GI:17233480;GeneID:1256225 NC_003277 17233403 putative outer membrane protein NC_003277 9676-10233 pefD Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT016080700000016 PSLT016 GI:17233481;GeneID:1256223 NC_003277 17233403 chaperone NC_003277 10248-10940 plasmid-encoded fimbriae; pefC Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT017080700000017 PSLT017 GI:17233482;GeneID:1256222 NC_003277 17233403 usher protein NC_003277 10933-13341 plasmid-encoded fimbriae; pefA Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT018080700000018 PSLT018 GI:17233483;GeneID:1256221 NC_003277 17233403 major fimbrial subunit NC_003277 13569-14087 plasmid-encoded fimbriae; pefB Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT019080700000019 PSLT019 GI:17233484;GeneID:1256219 NC_003277 17233403 regulatory protein NC_003277 14362-14664 plasmid-encoded fimbriae Salmonella typhimurium LT2 plasmid pSLT, complete sequence.
PSLT023080700000020 PSLT023 GI:17233485;GeneID:1256216 NC_003277 17233403 DNA replication protein NC_003277 16636-17625 Salmonella typhimurium LT2 plasmid pSLT, complete sequence.

Total number of rows: 4504

Table truncated, full table size 1131 Kbytes.




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Supplementary file Size Download File type/resource
GPL15224_081014_Styp_LT2_EXP.ndf.gz 4.3 Mb (ftp)(http) NDF
GPL15224_081014_Styp_LT2_EXP.ngd.gz 271.4 Kb (ftp)(http) NGD

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