NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL15385 Query DataSets for GPL15385
Status Public on Mar 29, 2012
Title Agilent-015618 Lactobacillus plantarum WCFS1 244k tiling array forward strand
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Lactiplantibacillus plantarum
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/.
 
 
Submission date Mar 28, 2012
Last update date Mar 29, 2012
Contact name Michiel Wels
E-mail(s) michiel.wels@nizo.com
Organization name NIZO food research
Street address Kernhemseweg 2
City Ede
ZIP/Postal code 6718 ZB
Country Netherlands
 
Samples (3) GSM905231, GSM905232, GSM905233
Series (1)
GSE36898 Genome-wide prediction and validation of σ70 promoters in Lactobacillus plantarum WCFS1

Data table header descriptions
ID
OLIGO_ID Internal ID of the oligonucleotide
RANGE_GB RefSeq genome accession.version
RANGE_START Start nucleotide of the probe
RANGE_END Stop nucleotide of the probe
BLOCK Block on the array slide
METAROW Meta row position on the array slide
METACOLUMN Meta column position on the array slide
ROW Row position on the array slide
COLUMN Column position on the array slide
SEQUENCE Sequence of oligonucleotide

Data table
ID OLIGO_ID RANGE_GB RANGE_START RANGE_END BLOCK METAROW METACOLUMN ROW COLUMN SEQUENCE
1 LPT1FW_37_006377 NC_006377.1 498 557 A 1 1 1 5 GTCATTAGCGGTTTAAGTTCTTCATCATCAAGTGGGATTATGACGCCAATATCTTTGTGA
2 LPT1FW_65846 NC_004567.2 921824 921883 A 1 1 1 6 ATTAGGTTACTTGGTCTTTTATCTGCTTAACCGGTATCTTAAAATTAAATTTTTGAGCGA
3 LPT1FW_66676 NC_004567.2 933444 933503 A 1 1 1 7 TGCCCCATCCCGACGTACCAGTTAGCTTGAAAGAAGAAGATGCCGTTGAATTACGTCGAA
4 LPT1FW_199125 NC_004567.2 2787730 2787789 A 1 1 1 8 ACGGAATGATCCAACGCGGTCCGCAATAACATAATTCCCAATACAATAAAGACCACACTA
5 LPT1FW_87176 NC_004567.2 1220444 1220503 A 1 1 1 9 CCGCAATTTTCTGGTTATTCATGTTTAATCCATCCGTGGGCTTGTTGAATAAGGTGGCCA
6 LPT1FW_123322 NC_004567.2 1726488 1726547 A 1 1 1 10 TTCTTTTGGTATCCTAGGCGGTGCCGGCTTTATTTACTTAGTCCTCAGCAGTGGCTGGCA
7 LPT1FW_47034 NC_004567.2 658456 658515 A 1 1 1 11 TTTGTGGTTGTGTCTTTGATGATCGCCGCCAAGATGCACATATCACCAATATTGCTGTAC
8 LPT1FW_123788 NC_004567.2 1733012 1733071 A 1 1 1 12 TTGCATGGTTCGAAATGTCCACTGAAAATCCAGAAAAGCCAACACCTGCTCAGCATCCGC
9 LPT1FW_51806 NC_004567.2 725264 725323 A 1 1 1 13 ACTTCGTTCTCGAATGTACTGGTTTCTACACTTCAAAGGCTAAGTCACAAGCTCACTTGG
10 LPT1FW_186537 NC_004567.2 2611498 2611557 A 1 1 1 14 CCATAATGAAAATTTTGTGCCGCCACATTATAACAGCCTGGACAGTGGAATGGGCAGCCG
11 LPT1FW_88959 NC_004567.2 1245406 1245465 A 1 1 1 15 AGGCGGATGTTAATGCGCGGATTGTCTTCGTGTCGACCCATTCTGAAATGGCCTTTTTGA
12 LPT1FW_110142 NC_004567.2 1541968 1542027 A 1 1 1 16 GAAATTTAGACCGGGTGAGGGTCCAACAGTAATCAGTTACACAAGTTGAATCATGTTTCA
13 LPT1FW_144592 NC_004567.2 2024268 2024327 A 1 1 1 17 TGTGCCACTAGTTCAGGGGTAGAGACACCGGTATACACCAATAAGGAGTCAATCCCAAAG
14 LPT1FW_188646 NC_004567.2 2641024 2641083 A 1 1 1 18 TCGCCAATAAGCCTAATGCCAAGCCCAACCAGAGTTGCCAATAACGAGGGCTAGCGTGCC
15 LPT1FW_212418 NC_004567.2 2973832 2973891 A 1 1 1 19 TCACCAATTGCCCGCATCATTAAAAAGAAGAAGAAGCCCAACACCAAGTACACCCACATG
16 LPT1FW_50914 NC_004567.2 712776 712835 A 1 1 1 20 GCACTTGCTGGAACGACTTTTCCAATCGACCGGGAATATAGTGCGAAACTATTAGGATTC
17 LPT1FW_178160 NC_004567.2 2494220 2494279 A 1 1 1 21 CTCAACAAGCACTTAAAGGAATTCAAGAGTGATTACAAGTTCCTGAAAAACCCAGTCGCT
18 LPT1FW_67292 NC_004567.2 942068 942127 A 1 1 1 22 ATGATGGTTCATTAGACACTTACAAGTTAATGAAATTCCGTCGTTCTAACGGTGGTAAGA
19 LPT1FW_57950 NC_004567.2 811280 811339 A 1 1 1 23 TTTGATAATCTGGGCCGCTATAATGTTAGTCATGTTAGCTGCTTGGTCAAGTAACATATT
20 LPT1FW_8553 NC_004567.2 119722 119781 A 1 1 1 24 CAGTAAAGGAGCAAAAATAAGATGACAGTGTTAACAACGATGTATCAACTAGCAAATGGT

Total number of rows: 241399

Table truncated, full table size 28732 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap