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Status
Public on Dec 13, 2012
Title
NimbleGen A.palmata 135K array v1.0
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Acropora palmata Manufacturer
NimbleGen
Manufacture protocol
High-density microarray prepared with Roche NimbleGen's digital manufacturing process. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen IRN/design name 6019040401. A 12X 135K custom expression array design with two 60-mer probes per contig sequence and one per singleton sequence (additional probes as specified in the .ngd file). The .ndf and .ngd files are available as supplementary files.
Submission date
Apr 02, 2012
Last update date
Dec 13, 2012
Contact name
Nicholas Polato
E-mail(s)
polato@psu.edu Organization name
Penn State University
Department
Biology
Lab
Baums
Street address
208 Mueller Lab
City
University Park
State/province
PA
ZIP/Postal code
16802
Country
USA
Samples (48)
GSM907976 , GSM907977 , GSM907978 , GSM907979 , GSM907980 , GSM907981
GSM907982 ,
GSM907983 ,
GSM907984 ,
GSM907985 ,
GSM907986 ,
GSM907987 ,
GSM907988 ,
GSM907989 ,
GSM907990 ,
GSM907991 ,
GSM907992 ,
GSM907993 ,
GSM907994 ,
GSM907995 ,
GSM907996 ,
GSM907997 ,
GSM907998 ,
GSM907999 ,
GSM908000 ,
GSM908001 ,
GSM908002 ,
GSM908003 ,
GSM908004 ,
GSM908005 ,
GSM908006 ,
GSM908007 ,
GSM908008 ,
GSM908009 ,
GSM908010 ,
GSM908011 ,
GSM1232568 ,
GSM1232569 ,
GSM1232570 ,
GSM1232571 ,
GSM1232572 ,
GSM1232573 ,
GSM1232574 ,
GSM1232575 ,
GSM1232576 ,
GSM1232577 ,
GSM1232578 ,
GSM1232579 Series (2)
GSE36983 Variation in the transcriptional response of threatened coral larvae to elevated temperatures
GSE50926 Intraspecific diversity among partners drives functional variation in coral symbioses
Data table header descriptions ID CONTAINER SEQ_ID PROBE_ID SEQUENCE
Data table ID CONTAINER SEQ_ID PROBE_ID SEQUENCE AOKF1013_g2_cP00480
BLOCK1
AOKF1013_g2_c
AOKF1013_g2_cP00480
TGTGCACAAATTCCTGAACCATCAACAAGTCAGCAAATGCGTCCCCTGGTATTTTAAGGC
AOKF1022_b2_cP00261
BLOCK1
AOKF1022_b2_c
AOKF1022_b2_cP00261
TGCTTTTCGCACTTTGCAATAAATTCTACGTAGAGGATTCTTGGTGTAGCGAGATTATTC
AOKF1022_g2_cP00510
BLOCK1
AOKF1022_g2_c
AOKF1022_g2_cP00510
AAAAGGATTACGGCCCAATCTGGGTTCCCTATCGAAAGAGTTACCACTGTTA
AOKF1024_g2_cP00156
BLOCK1
AOKF1024_g2_c
AOKF1024_g2_cP00156
TAACAACATTTTTTGGCCCCCTACCGTTTAAAAAAAGGGGTTTAA
AOKF1029_g2_cP00533
BLOCK1
AOKF1029_g2_c
AOKF1029_g2_cP00533
ATCATCACAACAGTAGGACACTTATGCCTACCTCAGCTTGGGGACAATTTGCATGTTACA
AOKF1031_g2_cP00692
BLOCK1
AOKF1031_g2_c
AOKF1031_g2_cP00692
TCTTTTGCTGGTTTCAGCAAATATGAAATCACACTGACAAGGTCATGACGCTTCTGCAAC
AOKF1034_g2_cP00454
BLOCK1
AOKF1034_g2_c
AOKF1034_g2_cP00454
AGTTTCATTGTTGTCTATCTGTCTAGCTGCTGCTGTCACTGCCAACAAGCTCTGAAGCTG
AOKF1040_g2_cP00558
BLOCK1
AOKF1040_g2_c
AOKF1040_g2_cP00558
CTTTCTTCATCAGCTGCTATGCTGTCACCTGTCGTTTGATTATTGCGTGATTGCGTCTTC
AOKF1045_g2_cP00610
BLOCK1
AOKF1045_g2_c
AOKF1045_g2_cP00610
AGAGGTGAAATCAATTGAGCATGTGCATGATTTAACATGATGTCGCGGTCATCCTCCACA
AOKF1046_g2_cP00633
BLOCK1
AOKF1046_g2_c
AOKF1046_g2_cP00633
TGTGCTCCCTTCTCCTATAACAGGCAATTGTGTTAAGTCAACCTCCGCATATATACAGCT
AOKF1050_b2_cP00005
BLOCK1
AOKF1050_b2_c
AOKF1050_b2_cP00005
GCACAATTTGTCAGAAGGACTGGGTCGAGAATTTTTGCTCACTCATCTATTTTTCAAGTG
AOKF1050_b2_cP00022
BLOCK1
AOKF1050_b2_c
AOKF1050_b2_cP00022
GACTGGGTCGAGAATTTTTGCTCACTCATCTATTTTTCAAGTGGAAACGCAGATAGTGAG
AOKF1050_b2_cP00042
BLOCK1
AOKF1050_b2_c
AOKF1050_b2_cP00042
CTCACTCATCTATTTTTCAAGTGGAAACGCAGATAGTGAGGTTACCTGCCATGATCAAGA
AOKF1057_b2_cP00397
BLOCK1
AOKF1057_b2_c
AOKF1057_b2_cP00397
AGGTCCTTACTGCTCTCCATACAGTCTCTTCTAGCAGAACCAAACAATGATAGTCCACTT
AOKF1057_g2_cP00418
BLOCK1
AOKF1057_g2_c
AOKF1057_g2_cP00418
TGGGGGCCCCCCGGCCCCCCAAATTTTGGGAGCCCCCGGGGGGAA
AOKF1062_g2_cP00320
BLOCK1
AOKF1062_g2_c
AOKF1062_g2_cP00320
CAAAAGACCTCATGTCATCTAGAGGGGACACAACGATGAATCCGTGACTCATCGTTAGAG
AOKF1064_b2_cP00086
BLOCK1
AOKF1064_b2_c
AOKF1064_b2_cP00086
CATAAATCTTTACGCTCTAGAAACAATATCCAGACACCTGCTTTGAAACTGATATCCTCA
AOKF1091_g2_cP00594
BLOCK1
AOKF1091_g2_c
AOKF1091_g2_cP00594
GGTGCTGATGTTCACTTCTGTCCTGCTGTCTGGGTGGACGACCGTCATGGAACCACCGGT
AOKF1098_g2_cP00402
BLOCK1
AOKF1098_g2_c
AOKF1098_g2_cP00402
TTTATTCAGTTTCCTATGCCGTGATCTACGGAGCCTGATATTTGAATTTCAATTTCATAA
AOKF1100_g2_cP00607
BLOCK1
AOKF1100_g2_c
AOKF1100_g2_cP00607
TCTTGCTCATTTGCCGGTTGTGAGGTATGTTCCTCAAGAAACCAAGGTGTCATAGGAAGA
137604 16170 Kbytes .Supplementary file Size Download File type/resource GPL15393_100708_NP_Apalmata_expr.ndf.gz
6.5 Mb
(ftp) (http) NDF
GPL15393_100708_NP_Apalmata_expr.ngd.gz
5.2 Mb
(ftp) (http) NGD
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