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Status
Public on Apr 04, 2012
Title
NimbleGen Streptococcus sanguinis SK36 080319_BK_mixed_bact_expr [DesignID: 7345]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Streptococcus sanguinis SK36 Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
385K-format:3 replicates of up to 13 probes per gene, 60 mer oligonucleotides, 3510 randomized sequence probes
Submission date
Apr 03, 2012
Last update date
Apr 04, 2012
Contact name
Sylvio Redanz
E-mail(s)
sylvio.redanz@med.uni-rostock.de Phone
0381 494 5939
Organization name
hospital university rostock
Department
Institute of microbiology, virology and hygiene
Lab
medical microbiology
Street address
Schillingallee 70
City
Rostock
State/province
Mecklenburg Vorpommern
ZIP/Postal code
18057
Country
Germany
Samples (12)
GSM908371 , GSM908372 , GSM908373 , GSM908374 , GSM908375 , GSM908376
Series (1)
GSE37007 Heterologous expression of sahH reveals that biofilm formation is autoinducer-2 independent in Streptococcus sanguinis, but is associated with an intact AMC
Relations Alternative to
GPL13444
Data table header descriptions ID GENE_NAME Name of the ORF to which the indicated probe is directed
ORF Entrez GeneID number of the ORF to which the indicated probe is directed
RANGE_GB GenBank accession.version of genome sequence
RANGE_START Start coordinate relative to RANGE_GB
RANGE_END End coordinate relative to RANGE_GB
RANGE_STRAND ORF orientation on the genome
DESCRIPTION Annotation.
Data table ID GENE_NAME ORF RANGE_GB RANGE_START RANGE_END RANGE_STRAND DESCRIPTION SSA_0001
dnaA
SSA_0001 CP000387 214
1566
+
Chromosomal replication initiator protein dnaA, putative
SSA_0002
dnaN
SSA_0002 CP000387 1725
2861
+
DNA polymerase III, beta chain, putative
SSA_0004
SSA_0004 CP000387 3303
3794
-
Lipoprotein, putative
SSA_0005
SSA_0005 CP000387 3961
5076
+
GTP-binding protein, putative
SSA_0006
pth
SSA_0006 CP000387 5149
5718
+
Peptidyl-tRNA hydrolase, putative
SSA_0008
trcF
SSA_0008 CP000387 5711
9214
+
Transcription-repair coupling factor, putative
SSA_0009
SSA_0009 CP000387 9305
9571
+
Ribosome-associated heat shock protein (S4), putative
SSA_0010
divIC
SSA_0010 CP000387 9564
9932
+
Cell division protein DivIC, putative
SSA_0011
SSA_0011 CP000387 9935
10063
+
Hypothetical protein
SSA_0012
SSA_0012 CP000387 10056
11339
+
Beta-lactamase class A, putative
SSA_0013
mesJ
SSA_0013 CP000387 11336
12613
+
Cell cycle control ATPase, PP-loop superfamily, putative
SSA_0014
hpt
SSA_0014 CP000387 12606
13160
+
Hypoxanthine guanine phosphoribosyltransferase, putative
SSA_0015
ftsH
SSA_0015 CP000387 13178
15157
+
Membrane ATPase FtsH, degrades sigma32 (integral membrane cell-division Zn metallo-peptidase), putative
SSA_0016
comX
SSA_0016 CP000387 15627
16112
+
ComX1, transcriptional regulator of competence-specific genes, putative
SSA_0017
mreC
SSA_0017 CP000387 22951
23766
+
Cell shape determining protein MreC, putative
SSA_0018
mreD
SSA_0018 CP000387 23768
24268
+
Cell-shape determining protein MreD, putative
SSA_0019
pcsB
SSA_0019 CP000387 24365
25579
+
Secreted antigen GbpB/SagA; peptidoglycan hydrolase; PcsB protein precursor, putative
SSA_0020
prsA
SSA_0020 CP000387 25704
26669
+
Ribose-phosphate pyrophosphokinase 1, putative
SSA_0021
SSA_0021 CP000387 26982
27551
+
Hypothetical protein
SSA_0022
srtB
SSA_0022 CP000387 27646
28488
+
Surface protein cell wall anchor, sortase_B family, putative
2270 195 Kbytes .Supplementary file Size Download File type/resource GPL15399_080319_BK_mixed_bact_expr.ndf.gz
22.3 Mb
(ftp) (http) NDF
GPL15399_080319_BK_mixed_bact_expr.ngd.gz
255.7 Kb
(ftp) (http) NGD
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