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Platform GPL15412 Query DataSets for GPL15412
Status Public on Dec 31, 2021
Title CRC-OHS Porphyromonas gingivalis W83 1977v1
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Porphyromonas gingivalis W83
Manufacturer Oligonucleotide probes synthesized by Geneworks (Illumina Oligator). Microarrays printed by The Australian Genome Research Facility.
Manufacture protocol Microarray consists of 1,977 60-mer oligonucleotides based on the >1,990 predicted open reading frames of P. gingivalis W83 (RefSeq accession number NC_002950.2). Additional probes are based on predicted protein coding regions found in the Los Alamos National Laboratory (LANL) Oralgen project (www.oralgen.lanl.gov). The full complement of probes are printed four times onto each microarray slide.
 
 
Submission date Apr 05, 2012
Last update date Dec 31, 2021
Contact name Catherine Butler
E-mail(s) cbutler@unimelb.edu.au
Phone 61-3-93411565
Organization name The University of Melbourne
Department The Melbourne Dental School
Lab The Reynolds Lab
Street address 720 Swanston St
City Carlton
State/province VIC
ZIP/Postal code 3053
Country Australia
 
Samples (12) GSM910271, GSM910272, GSM910273, GSM910274, GSM910275, GSM910276 
Series (1)
GSE37072 Porphyromonas gingivalis W50 wild type vs. FeoB mutant

Data table header descriptions
ID
GB_RANGE Location of LANL probes (accession.version[start..end])
SEQUENCE Sequence of unique 60-mer oligonucleotide
ORF Locus tag derived from NC_002950.2
GENOME_ACC RefSeq accession.version of genome from which ORFs are derived
Cross_Reference For cross referencing experimental data
ORGANISM Organism
TIGR_Annotation Locus tag based on the TIGR genome database, RefSeq NC_002950.2
LANL_LocusTag Locus tag based on the LANL genome database
Gene_Product Gene product based on NC_002950.2
SPOT_ID

Data table
ID GB_RANGE SEQUENCE ORF GENOME_ACC Cross_Reference ORGANISM TIGR_Annotation LANL_LocusTag Gene_Product SPOT_ID
1 TGCACTTTGCACCAATACATAAGGAAGCCTCTGCCAAGAACCGCTCGGTTGTCTCGGCAA PG1546 NC_002950.2 PG1546 Porphyromonas gingivalis W83 PG1546 hypothetical protein
2 GCCGATGTGGTCGTATTGGCAAGAGAGCTGAATATGGATCAGGTGCGTACAATCCACGAG PG1542 NC_002950.2 PG1542 Porphyromonas gingivalis W83 PG1542 PG1349 collagenase
3 TTCTGGGCTTCATATTGATGTCAGGGGGAGGATCAGCCGACCAAGTAAGCTTCAATCCGG PG1537 NC_002950.2 PG1537 Porphyromonas gingivalis W83 PG1537 PG1344 hypothetical protein
4 CAGACTTTGGAGGAGCTTGCAGACACTCTTACAAATCATGCCCTCTTAGATCGAGCAGGG PG1529 NC_002950.2 PG1529 Porphyromonas gingivalis W83 PG1529 PG1337 hypothetical protein
5 AGAGGAATACTCTCGAGGACAAAAGATTGCAATCAAAGCATTGCTATTAAGCCCTCAGGC PG1516 NC_002950.2 PG1516 Porphyromonas gingivalis W83 PG1516 PG1327 hypothetical protein
6 TGATCGGAGAGGCTGTTGGGAAATACCATGCTGGGGTATACAGAGGCCAACAACTTTTGC PG0118 NC_002950.2 PG0118 Porphyromonas gingivalis W83 PG0118 PG0103 glycosyl transferase, group 2 family protein
7 GAGCAGCCTAACATCAAGACTATCCTCGTCACCAAAGACGTGAACCTGCGGATGAAAGCC PG1323 NC_002950.2 PG1323 Porphyromonas gingivalis W83 PG1323 PG1161 PhoH family protein
8 AGATATCATGACGCATGGCCCTCAGATAGAAAGTGCAAAGTGCGAAGGTGGGCGCGTGTA PG1312 NC_002950.2 PG1312 Porphyromonas gingivalis W83 PG1312 PG1152 capA protein, putative
9 GGAGTCCCTGTTATAGGAAATAATGTCCAGATTAGCCGAGGAAGTGTGGTTTTTGGCGGG PG0115 NC_002950.2 PG0115 Porphyromonas gingivalis W83 PG0115 PG0100.1 hexapeptide transferase family protein
10 GCGACTTCTTCACCGGCAAGCAATGACATAGGAGAGCAATCCGCAAATCCCGATTCGAAC PG1294 NC_002950.2 PG1294 Porphyromonas gingivalis W83 PG1294 PG1138 ferrous iron transport protein B
11 GCTGATCAATCTGCACTACGGGGACATGACGGACAGCTCCTCTTTGGTACGCATCATTCA PG1288 NC_002950.2 PG1288 Porphyromonas gingivalis W83 PG1288 PG1134 GDP-mannose 4,6-dehydratase
12 CGGAGTAGGCAAGACTACGCTGGCCGAAATCATCGCTCATGAAGTGGATGCACCTTTCTA PG1103 NC_002950.2 PG1103 Porphyromonas gingivalis W83 PG1103 PG0982 recombination factor protein RarA
13 CTACATCCACAGGAGAACTGATGGTAGTCGTGGTCTTCTTTCGCGACGATGTTGCTGCTC PG1095 NC_002950.2 PG1095 Porphyromonas gingivalis W83 PG1095 PG0974 RNA methyltransferase
14 AGTACAGAAGATTACCCTCAATGCAGGCTTCACCTGTCCCAACCGAGACGGACTGAAAGG PG1087 NC_002950.2 PG1087 Porphyromonas gingivalis W83 PG1087 PG0968 radical SAM family protein
15 ACCTTATGGCTACGATTATCAGCAAGGAGCATCGTCCTCAGATGTCTACGGTTCGTCCCG PG1078 NC_002950.2 PG1078 Porphyromonas gingivalis W83 PG1078 PG0960 electron transfer flavoprotein, alpha subunit
16 ACAGTTCGATGTCAATTTGCTACACAGGCACATGCCCAATGCAGCCACCCATAGCGAAGC PG0001 NC_002950.2 PG0001 Porphyromonas gingivalis W83 PG0001 PG0001 chromosomal replication initiation protein
17 GCTACCGGAGCTGCTTTGTCCATCAATATACCTCAGTTGGTCCGTAAAACGGCTGCTGTG PG1071 NC_002950.2 PG1071 Porphyromonas gingivalis W83 PG1071 PG0953 hypothetical protein
18 AAAGAGGAAACCGCGGGAATGGCAGCGAAAGAAGCTCAGGTAATAGCTACGGAAGTGCCT PG0255 NC_002950.2 PG0255 Porphyromonas gingivalis W83 PG0255 PG0230 translation initiation factor IF-2
19 AAGTCCCCGAACCTACTCTGAGGCGTCTTCCCTGGTATTTGTCTTACGTCCAGCTTTTGC PG0024 NC_002950.2 PG0024 Porphyromonas gingivalis W83 PG0024 PG0020 redox-sensing transcriptional repressor Rex
20 CAGTACGCTGCACTATGTGATGGAGGCTTGTGCCGAGGAGCAGAAAAAGCTGATCGTTAC PG0231 NC_002950.2 PG0231 Porphyromonas gingivalis W83 PG0231 PG0211 hypothetical protein

Total number of rows: 9248

Table truncated, full table size 1333 Kbytes.




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