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Platform GPL15425 Query DataSets for GPL15425
Status Public on Feb 20, 2013
Title Agilent-030568 Custom Oryzias latipes microarray (UT2010)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Oryzias latipes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16030568 or 2530568.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Apr 11, 2012
Last update date Feb 20, 2013
Contact name Tokiro Ishikawa
E-mail(s) tishikawa@upr.biophys.kyoto-u.ac.jp
Organization name Graduate School of Science, Kyoto University
Department Biophysics
Street address Kitashirakawa-oiwake, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8502
Country Japan
 
Samples (4) GSM912887, GSM912888, GSM912889, GSM912890
Series (1)
GSE37174 The effect of deficiency of two ATF6 homologues at early developmental stage

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner pos CONTROL
2 266 168 DarkCorner pos CONTROL
3 266 166 DarkCorner pos CONTROL
4 266 164 DarkCorner pos CONTROL
5 266 162 DarkCorner pos CONTROL
6 266 160 DarkCorner pos CONTROL
7 266 158 DarkCorner pos CONTROL
8 266 156 DarkCorner pos CONTROL
9 266 154 DarkCorner pos CONTROL
10 266 152 DarkCorner pos CONTROL
11 266 150 DarkCorner pos CONTROL
12 266 148 SY_004580 FALSE dola:24244 unmapped ENSORLG00000019483 ATTTAACCGCTGGTTTTCTAGATGGTACCCAGAAAACGGCGTTGGTTTTGTGGATAACCG dola:24244
13 266 146 SY_003626 FALSE dola:6737 unmapped ENSORLG00000005347; K05754 actin related protein 2/3 complex, subunit 5 TTTGGACAAAGGTGAAGTGGACCTGCTGATGAAATACATCTACAAGGGCTTTGAGAAGCC dola:6737
14 266 144 SY_010829 FALSE dola:18556 unmapped ENSORLG00000014799 TCATATTCAGGGAAATGTGATCACTTCTGATCAGCCTATTCTGCTGAGACTGAGTGACAC dola:18556
15 266 142 SY_009093 FALSE dola:22207 unmapped ENSORLG00000017745 AACCTGGACTATCACTTTGTTAAACCCTTCTCCTCCTATAAAGTTCTCGAAGCTTATTGA dola:22207
16 266 140 SY_016092 FALSE dola:22100 unmapped ENSORLG00000017660; K10310 F-box protein 33 CTAGCTGTCCTGGTCATACATGGTTACATTGTGTGGTCACATAACCTGGTAGCCATTTCA dola:22100
17 266 138 SY_006621 FALSE dola:7780 unmapped ENSORLG00000006186 GCAACCATGCTGGCTTGTGGGATTGACGAGTTTCATAATTTCTCTGACAAAAGATCTTAG dola:7780
18 266 136 SY_016352 FALSE dola:6727 unmapped ENSORLG00000005336 ACATTTCCAACAGCGGAGAGATTCACATTTGGGTAAAAGACTGCAAAGGCCTTCCTCTCA dola:6727
19 266 134 SY_013422 FALSE dola:1290 unmapped ENSORLG00000001046; K03175 TNF receptor-associated factor 6 TTGGAGTGGGTCTTAAGGCATAAGGATAGAAAATCCAATCATAAACTTGCAGGGCAGCTG dola:1290
20 266 132 SY_014466 FALSE olvlno36_k05 unmapped synaptojanin CG6562-PB, isoform B [Drosophila melanogaster] TGGACCTGCTCACGTTCTGCTCTCTGCTCCTCGTATTAAAAACTCTTACCCGCCAAAAAA olvlno36_k05

Total number of rows: 45220

Table truncated, full table size 6788 Kbytes.




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