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Platform GPL15426 Query DataSets for GPL15426
Status Public on Apr 11, 2013
Title Agilent-035655 Mouse miRNA_v17
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Mus musculus miRNAs MiRBase v17 (Agilent

Arrays of this design have barcodes that begin with 16035655 or 2535655.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Apr 11, 2012
Last update date Apr 11, 2013
Contact name Karin Weber
E-mail(s) karin.weber@lmu.de
Organization name Zentrum für klinische Tiermedizin
Department Medizinische Kleintierklinik
Street address Veterinärstr. 13
City Munich
ZIP/Postal code 80539
Country Germany
 
Samples (15) GSM913033, GSM913034, GSM913035, GSM913036, GSM913037, GSM913038 
Series (1)
GSE37177 miRNA expression profiles in the serum of diabetic cats

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
miRNA_ID

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION miRNA_ID
1 192 328 miRNABrightCorner30 pos
2 192 326 Blank pos
3 192 324 Blank pos
4 192 322 Blank pos
5 192 320 Blank pos
6 192 318 Blank pos
7 192 316 Blank pos
8 192 314 Blank pos
9 192 312 Blank pos
10 192 310 Blank pos
11 192 308 A_54_P1438 FALSE mmu-miR-100-5p mmu-miR-100-5p mir|mmu-miR-100-5p|mir|MIMAT0000655|mir|mmu-miR-100_v17.0|mir|MIMAT0000655 chr9:041339523-041339541,chr9:041339523-041339541 mmu-miR-100-5p
12 192 306 A_54_P3385 FALSE mmu-miR-106b-3p mmu-miR-106b-3p mir|mmu-miR-106b-3p|mir|MIMAT0004582|mir|mmu-miR-106b*_v17.0|mir|MIMAT0004582 chr5:138607037-138607026,chr5:138607037-138607026 mmu-miR-106b-3p
13 192 304 A_54_P3461 FALSE mmu-miR-29a-5p mmu-miR-29a-5p mir|mmu-miR-29a-5p|mir|MIMAT0004631|mir|mmu-miR-29a*_v17.0|mir|MIMAT0004631 chr6:031012696-031012677,chr6:031012696-031012677 mmu-miR-29a-5p
14 192 302 A_54_P2426 FALSE mmu-miR-296-3p mmu-miR-296-3p mir|mmu-miR-296-3p|mir|MIMAT0004576 chr2:174092615-174092605 mmu-miR-296-3p
15 192 300 NA ignore
16 192 298 A_54_P2728 FALSE mmu-miR-425-5p mmu-miR-425-5p mir|mmu-miR-425-5p|mir|MIMAT0004750|mir|mmu-miR-425_v17.0|mir|MIMAT0004750 chr9:108471125-108471142,chr9:108471125-108471142 mmu-miR-425-5p
17 192 296 A_54_P1216 FALSE mmu-miR-293-3p mmu-miR-293-3p mir|mmu-miR-293-3p|mir|MIMAT0000371|mir|mmu-miR-293_v17.0|mir|MIMAT0000371 chr7:003220395-003220412,chr7:003220395-003220412 mmu-miR-293-3p
18 192 294 NA ignore
19 192 292 A_54_P3499 FALSE mmu-miR-10a-3p mmu-miR-10a-3p mir|mmu-miR-10a-3p|mir|MIMAT0004659|mir|mmu-miR-10a*_v17.0|mir|MIMAT0004659 chr11:096178545-096178562,chr11:096178545-096178562 mmu-miR-10a-3p
20 192 290 A_54_P00005630 FALSE mmu-miR-5132 mmu-miR-5132 mir|mmu-miR-5132|mir|MIMAT0020643 chrX:71268894-71268881 mmu-miR-5132

Total number of rows: 62976

Table truncated, full table size 8437 Kbytes.




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