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Platform GPL15455 Query DataSets for GPL15455
Status Public on Apr 18, 2012
Title LC Sciences Gallus gallus miRChicken_15
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Gallus gallus
Manufacturer LC Sciences
Manufacture protocol Arrays are made based on µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer-defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.
 
Description Part No.: MRA-1005
Name: Chicken miRNA Array
Version No.: miRChicken_15

No. of Unique Chicken Probes: 542; No. of Repeats: 6

Based on Sanger miRBase Release 15.
 
Submission date Apr 17, 2012
Last update date Apr 18, 2012
Contact name Hongmei Li
E-mail(s) lhm-lhm@sohu.com
Phone 13316044567
Organization name south china agricultural university
Street address Guangzhou tianhe wushan street
City Guangzhou
ZIP/Postal code 510640
Country China
 
Samples (6) GSM916676, GSM916677, GSM916678, GSM916831, GSM916832, GSM916833
Series (3)
GSE37360 Let-7b regulates skeletal muscle growth, development and fat deposition in deletion-type dwarf chickens (14-day-old embryos)
GSE37367 Let-7b regulates skeletal muscle growth, development and fat deposition in deletion-type dwarf chickens (7-week-old chickens)
GSE37368 Let-7b regulates skeletal muscle growth, development and fat deposition in deletion-type dwarf chickens

Data table header descriptions
ID Reporter_Name; Name of the probe on the chip
miRNA_ID miRBase identifier
MB_ACC miRBase accession
Target_Sequence Target sequence (5' to 3') of the probe
Reporter_Source Standard miRNA or customer-defined sequence

Data table
ID miRNA_ID MB_ACC Target_Sequence Reporter_Source
gga-let-7a gga-let-7a MIMAT0001101, MIMAT0001181 UGAGGUAGUAGGUUGUAUAGUU standard
gga-let-7b gga-let-7b MIMAT0001102 UGAGGUAGUAGGUUGUGUGGUU standard
gga-let-7c gga-let-7c MIMAT0001104 UGAGGUAGUAGGUUGUAUGGUU standard
gga-let-7d gga-let-7d MIMAT0001161 AGAGGUAGUGGGUUGCAUAGU standard
gga-let-7f gga-let-7f MIMAT0001162 UGAGGUAGUAGAUUGUAUAGUU standard
gga-let-7g gga-let-7g MIMAT0001160 UGAGGUAGUAGUUUGUACAGU standard
gga-let-7i gga-let-7i MIMAT0001098 UGAGGUAGUAGUUUGUGCUGU standard
gga-let-7k gga-let-7k MIMAT0001182 UGAGGUAGUAGAUUGAAUAGUU standard
gga-miR-100 gga-miR-100 MIMAT0001178 AACCCGUAGAUCCGAACUUGUG standard
gga-miR-101 gga-miR-101 MIMAT0001185 GUACAGUACUGUGAUAACUGAA standard
gga-miR-103 gga-miR-103 MIMAT0001145 AGCAGCAUUGUACAGGGCUAUGA standard
gga-miR-106 gga-miR-106 MIMAT0001142 AAAAGUGCUUACAGUGCAGGUA standard
gga-miR-107 gga-miR-107 MIMAT0001147 AGCAGCAUUGUACAGGGCUAUCA standard
gga-miR-10a gga-miR-10a MIMAT0007731 UACCCUGUAGAUCCGAAUUUGU standard
gga-miR-10a* gga-miR-10a* MIMAT0007732 AAAUUCGUAUCUAGGGGAAUA standard
gga-miR-10b gga-miR-10b MIMAT0001148 UACCCUGUAGAACCGAAUUUGU standard
gga-miR-122 gga-miR-122 MIMAT0001190 UGGAGUGUGACAAUGGUGUUUGU standard
gga-miR-122b gga-miR-122b MIMAT0007719 AGUGUGACACUGGUGUUUUU standard
gga-miR-124a gga-miR-124a MIMAT0001128 UUAAGGCACGCGGUGAAUGCCA standard
gga-miR-124b gga-miR-124b MIMAT0001174 UUAAGGCACGCAGUGAAUGCCA standard

Total number of rows: 542

Table truncated, full table size 37 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL15455_Data_Layout.txt.gz 45.0 Kb (ftp)(http) TXT
GPL15455_Sequence_List.txt.gz 12.7 Kb (ftp)(http) TXT

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