NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL15524 Query DataSets for GPL15524
Status Public on Sep 05, 2012
Title AECOM Human 28K HH5 series
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Albert Einstein College of Medicine Microarray Facility
Manufacture protocol Information about the AECOM custom-printed chips can be found in http://microarray1k.aecom.yu.edu/. Unique Genome Systems human full lenght cDNAs from the I.M.A.G.E. consortium were used for printing on glass slides. The arrays were printed under rigorous clean-room conditions and quality control is employed all along the way, starting with preparation of the printing material as well as during the actual printing and finally with post-printing tests that include a sample chip hybridization. The microarray printer consists of a three-axis robot mounted on a Newport Vibration Isolation Workstation table with a research-grade laser tabletop. The three-axis mechanical slides are from THK and are selected to provide the best combination possible of precision and speed consistent with the design objectives. The Pen Tip Assembly consists of a proprietary design having 12 pen tips contained within a precision-machined housing that is supported by the moving block on the Z-axis slide. The mechanical slides are positioned with motors and servo amplifiers from Yaskawa. The robot can spot 12 points every 1/2 second, or, 100 slides with 12 spots each in under 60 seconds. The resulting slides of the HH5 series had the following configuration: HUMAN 27K gene chips: 48 grids, 26 columns X 23 rows each.
 
 
Submission date May 03, 2012
Last update date Sep 05, 2012
Contact name Antonia Patsialou
E-mail(s) antonia.patsialou@einstein.yu.edu
Organization name Albert Einstein College of Medicine
Department Anatomy and Structural Biology
Lab Laboratory of John Condeelis
Street address 1301 Morris Park Ave
City Bronx
State/province NY
ZIP/Postal code 10461
Country USA
 
Samples (8) GSM926512, GSM926513, GSM926514, GSM926515, GSM926516, GSM926517 
Series (1)
GSE37733 Human breast cancer invasion signature

Data table header descriptions
ID
GB_ACC GenBank Accession number
UniGene ID UniGene accession number
Symbol Gene Symbol in NCBI Entrez
SPOT_ID

Data table
ID GB_ACC UniGene ID Symbol SPOT_ID
1001 AA025137 Hs.530823 COPS7A
1002 AA398120 NA NA
1003 N54321 Hs.597074 NA
1004 N25085 Hs.514843 NA
1005 AA598797 Hs.21907 MYST2
1006 W86002 Hs.185675 NA
1007 AA287196 Hs.592528 NA
1008 R19889 Hs.369761 DAZAP2
1009 BG335558 Hs.25450 SLC29A1
1010 NM_001966 Hs.429879 EHHADH
1011 BE786113 Hs.460260 NA
1012 AI217655 Hs.286145 MED21
1013 AA398332 Hs.209000 NA
1014 N56947 Hs.696018 CHD1
1015 AA437213 Hs.662617 NA
1016 N90246 Hs.89839 EPHA1
1017 T98075 Hs.676455 NA
1018 AA236617 Hs.522795 ARHGEF6
1019 AV702374 Hs.3192 PCBD1
1020 AA682865 Hs.680271 NA

Total number of rows: 11164

Table truncated, full table size 308 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap