NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL15573 Query DataSets for GPL15573
Status Public on May 15, 2013
Title Agilent-019029 MycAbs_Design2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mycobacteroides abscessus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16019029 or 2519029.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date May 15, 2012
Last update date May 15, 2013
Contact name Alexandre Pawlik
E-mail(s) alexandre.pawlik@pasteur.fr
Organization name Institut Pasteur
Lab PMI
Street address 28 rue du Dr. Roux
City Paris
ZIP/Postal code 75015
Country France
 
Samples (3) GSM931300, GSM931301, GSM931302
Series (1)
GSE37984 Identification of molecular key determinants of the Mycobacterium abscessus smooth and rough morphotypes through transcriptome analyses

Data table header descriptions
ID NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE
MAB_0001_466_2 MAB_0001_466_2 FALSE unmapped TACACCTTCGAATCCTTTGTTATCGGAGCATCCAACCGGTTCTCC
MAB_0001_671_2 MAB_0001_671_2 FALSE unmapped AAGAATTCACCAACGACTTCATCAACTCTTTGCGCGATGACCGCC
MAB_0001_819_2 MAB_0001_819_2 FALSE unmapped CTTCAACACCTTGCACAACGCGAACAAGCAGATCGTGATCTCCTC
MAB_0002_1140_2 MAB_0002_1140_2 FALSE unmapped GTTTACGGCGGCGCAAACTGACTATGTCTATCTATTGATGCCGGT
MAB_0002_1151_2 MAB_0002_1151_2 FALSE unmapped CGCAAACTGACTATGTCTATCTATTGATGCCGGTGCGTCTGCCCG
MAB_0002_502_2 MAB_0002_502_2 FALSE unmapped CGTGTCGAAATAAACGGTGACACAGTGGTTTTGGCTGCGACTGAC
MAB_0003_487_2 MAB_0003_487_2 FALSE unmapped CACTACGCAAAGATGATCCATAACGGCATCGAGTACGGGCTCATG
MAB_0003_490_2 MAB_0003_490_2 FALSE unmapped TACGCAAAGATGATCCATAACGGCATCGAGTACGGGCTCATGCAC
MAB_0003_798_2 MAB_0003_798_2 FALSE unmapped GTCACGGCAAGAGGACTCACCGGCAATGAAGGCTGTCTCGGCATT
MAB_0004_1009_2 MAB_0004_1009_2 FALSE unmapped GTGTTAATGCTTGATGACGTTTTCGCCGAGCTCGACGGTGCCCGG
MAB_0004_275_2 MAB_0004_275_2 FALSE unmapped TTGTGGTCAATGATGGTCGTGAGTTGGCGATCGATCTGGAGATTG
MAB_0004_278_2 MAB_0004_278_2 FALSE unmapped TGGTCAATGATGGTCGTGAGTTGGCGATCGATCTGGAGATTGCCG
MAB_0005_388_2 MAB_0005_388_2 FALSE unmapped GCGACACAGCTCCGATTGGTGCAGGCACAGCTGCTGGCGAAGATCG
MAB_0005_388_2_bis MAB_0005_388_2_bis FALSE unmapped GCGACACAGCTCCGATTGGTGCAGGCACAGCTGCTGGCGAAGATCG
MAB_0006_1185_2 MAB_0006_1185_2 FALSE unmapped GTTCGACTCGAACCCGGCAGATGCTAAAACGGTTGTGAATAAGGC
MAB_0006_1476_2 MAB_0006_1476_2 FALSE unmapped CATCGACCGGGTTTTGAAGAACACCGAAGTCCAGGCGATTATCAC
MAB_0006_32_2 MAB_0006_32_2 FALSE unmapped AATACAGTGCTGACTCGATCACCATTCTAGAGGGGCTCGAAGCTG
MAB_0007_817_2 MAB_0007_817_2 FALSE unmapped ACGATCAAGGATTGGAAGGGAAAGCTCAAGTTCCTTGCGAAGAAG
MAB_0007_886_2 MAB_0007_886_2 FALSE unmapped GAGATTGGCACGTTAGCAAATATTCTCAGGCAAGTCTGGAATGAG
MAB_0007_893_2 MAB_0007_893_2 FALSE unmapped GCACGTTAGCAAATATTCTCAGGCAAGTCTGGAATGAGGCAACGA

Total number of rows: 13771

Table truncated, full table size 1236 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15573_019029_D_GEO_20120206.txt.gz 459.7 Kb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap