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Platform GPL15588 Query DataSets for GPL15588
Status Public on Dec 31, 2012
Title NimbleGen Mouse DNA Methylation 2.1M Economy Whole-Genome Tiling Arrays (1/4)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol see manufacturer's website
 
Description Format: 2.1M
Format: Source: UCSC
Format: Build: MM9
Format: Probe Length: 50-75mer
Format: Median Probe Spacing: 255
 
Submission date May 21, 2012
Last update date Dec 31, 2012
Contact name Xiwei Wu
E-mail(s) xwu@coh.org
Organization name City of Hope National Medical Center
Department Computational and Quantitative Medicine
Street address 1500 E. Duarte Rd.
City Duarte
State/province CA
ZIP/Postal code 91010
Country USA
 
Samples (10) GSM934826, GSM934827, GSM934828, GSM934829, GSM934830, GSM934831 
Series (1)
GSE38118 Dynamics of 5-hydroxymethylcytosine and chromatin marks in mammalian neurogenesis

Data table header descriptions
ID
PROBE_ID
SEQ_ID
RANGE_START
RANGE_END
SEQUENCE
RANGE_GB

Data table
ID PROBE_ID SEQ_ID RANGE_START RANGE_END SEQUENCE RANGE_GB
1 CHR01FS003000001 chr1:1-197195432 3000001 3000055 GAATTCTTTTCTATGATTTAGTTTAATATGTTTTCTGGGTGTTTCAGCTGAAACT NC_000067.5
2 CHR01FS003000253 chr1:1-197195432 3000253 3000312 CAATGCCTAAGATTTTGTCTTTCTTCTCTTGTAATCTGTTGGTAATGCTTGCTTCTGTAG NC_000067.5
3 CHR01FS003000493 chr1:1-197195432 3000493 3000551 TCTTGATTTCTTTAGGATATTTCTTTTTCATTTTCCTTTGAGGATCTCTATCATCTTCA NC_000067.5
4 CHR01FS003000762 chr1:1-197195432 3000762 3000814 TGTTTTTTCTGTTTCCTTTTCAGTTTTTTGGCTTTTGTGATCTGGATTTTTGA NC_000067.5
5 CHR01FS003001017 chr1:1-197195432 3001017 3001066 CAGTGGGATAGGTGGTGAGATAGGTGGGGAGGTGCTAGAATGGGTCTTTG NC_000067.5
6 CHR01FS003001227 chr1:1-197195432 3001227 3001282 TAGGCATTCTTAATGTTTTTATTTTCCCATCTCCTCCCTAATTAGAGTCATTCTGG NC_000067.5
7 CHR01FS003001482 chr1:1-197195432 3001482 3001540 TACTTCACTCTATAAGATCTTCTCTTGTTTCACCAACTTACTGGAGAAAGGCCAGATGT NC_000067.5
8 CHR01FS003001752 chr1:1-197195432 3001752 3001801 GGTTCCTGAGGATTGAGTGTTTCAGAACTGCCAGAGAAATGACTCAAAGT NC_000067.5
9 CHR01FS003002087 chr1:1-197195432 3002087 3002139 CCTTTGTAAGCACTGACAATAAACTAGCTATGTGGGATCTTGCTCTGAGATCA NC_000067.5
10 CHR01FS003002307 chr1:1-197195432 3002307 3002357 CAGAATTCTTTCATACAGTCTTAAGGGCTGTCGTGAAGACCACAGTGTTCA NC_000067.5
11 CHR01FS003002567 chr1:1-197195432 3002567 3002616 TAGAATGGAACTATGTCATGCCATCCATTCTGCGTGGTAGGACTCAGCAA NC_000067.5
12 CHR01FS003002827 chr1:1-197195432 3002827 3002883 GCCTGAGTGTGACAATGACTGAGGTGACATTCTACTTACTAGTTCTAAAAACAGTCA NC_000067.5
13 CHR01FS003003107 chr1:1-197195432 3003107 3003160 TTTGTTTAACTCCCTTTTAGAAAATCCATAAGTGATTTATTCTTCTGTATCTGG NC_000067.5
14 CHR01FS003003317 chr1:1-197195432 3003317 3003373 TCCTTAAGGCAAAAAGAGTGTCAGATCCTATGAGACTAGAGTTACAGATAGTTGGGA NC_000067.5
15 CHR01FS003003591 chr1:1-197195432 3003591 3003647 CTTTCTATTTCGGTAAAGGATTTAGAGTAAAATTATGATGAATCTGCACATTGCTTT NC_000067.5
16 CHR01FS003003831 chr1:1-197195432 3003831 3003891 CTATGTGTGAGTACCTGATAGATTAACAGATATGGAGATTTAAAAGAAATGACCAAACATC NC_000067.5
17 CHR01FS003004127 chr1:1-197195432 3004127 3004180 TATACTTTAAGTACTTGCATGTTTTGTAAAATAAATAATTCAAAATTTATACAT NC_000067.5
18 CHR01FS003004362 chr1:1-197195432 3004362 3004418 ACATGGGAGGGTTAACAGTTCTCTGTGGTTCCACATACTTTTAAATCTATCATTCTC NC_000067.5
19 CHR01FS003004612 chr1:1-197195432 3004612 3004661 ACGGTACCTAGAAAACTCTCCACACGATCTTAGGACCTCCAGTGGAACAC NC_000067.5
20 CHR01FS003010856 chr1:1-197195432 3010856 3010905 GCCTGCCCTCCTCAGAGTCCGGAACCAAGGTGGCTCCTGCGGAGCCTGAG NC_000067.5

Total number of rows: 2178447

Table truncated, full table size 271823 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15588_100205_MM9_Economy_MeDIP_01_HX1.ndf.gz 118.4 Mb (ftp)(http) NDF
GPL15588_100205_MM9_Economy_MeDIP_01_HX1.pos.gz 16.4 Mb (ftp)(http) POS
GPL15588_100205_MM9_Economy_MeDIP_01_HX1_FT.txt.gz 59.7 Mb (ftp)(http) TXT

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