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Platform GPL15609 Query DataSets for GPL15609
Status Public on May 31, 2012
Title NimbleGen Saccharomyces cerevisiae 385K [2006-08-18_TI4932_60mer]
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Saccharomyces cerevisiae S288C
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/
 
Description Design Name : 2006-08-18_TI4932_60mer Format : 385K (Arrays Per Slide: 1, Probes Per Array: 385,000, Feature Size: 16um x 16um, Slide Size: 1 x 3 (25 x 75mm)) Accession Numbers : Target Genes : 5,868 Probes per target : 20 Replicates : 3
 
Submission date May 25, 2012
Last update date May 31, 2012
Contact name Kozo Ochi
E-mail(s) k.ochi.bz@it-hiroshima.ac.jp
Phone 81-82-921-6923
Fax 81-82-921-6961
Organization name Hiroshima Institute of Technology
Department Food Sciences and Biotechnology
Street address 2-1-1 Miyake, Saeki-ku
City Hiroshima
State/province Hiroshima
ZIP/Postal code 731-5193
Country Japan
 
Samples (2) GSM937245, GSM937246
Series (1)
GSE38239 Expression analysis of Saccharomyces cerevisiae INVSc1 under accumulation of the bacterial alarmone ppGpp

Data table header descriptions
ID
SPECIES_CODE
FEAT_TYPE
ORF ORF Name AND Saccharomyces cerevisiae [organism]"
FUNCTION
CHROMOSOME
MAPLOC
DESCRIPTION
COMMENTS

Data table
ID SPECIES_CODE FEAT_TYPE ORF FUNCTION CHROMOSOME MAPLOC DESCRIPTION COMMENTS
TI4932S000001 Saccharomyces cerevisiae CDS YAL068C hypothetical protein NC_001133 1807-2169 Pau8p; go_component: cellular component unknown [goid GO:0008372] [evidence ND]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000002 Saccharomyces cerevisiae CDS YAL067W-A Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching NC_001133 2480-2707 Yal067w-ap; go_component: cellular component unknown [goid GO:0008372] [evidence ND]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000003 Saccharomyces cerevisiae CDS YAL067C Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide NC_001133 7236-9017 Seo1p; go_component: membrane [goid GO:0016020] [evidence ISS] [pmid 9348664]; go_function: transporter activity [goid GO:0005215] [evidence ISS] [pmid 9348664]; go_process: transport [goid GO:0006810] [evidence ISS] [pmid 9348664] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000004 Saccharomyces cerevisiae CDS YAL065C hypothetical protein NC_001133 11566-11952 Yal065cp; go_component: cellular component unknown [goid GO:0008372] [evidence ND]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000005 Saccharomyces cerevisiae CDS YAL064W-B hypothetical protein NC_001133 12047-12427 Yal064w-bp; go_component: cellular component unknown [goid GO:0008372] [evidence ND]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000006 Saccharomyces cerevisiae CDS YAL064C-A hypothetical protein NC_001133 13364-13744 Yal064c-ap; go_component: cellular component unknown [goid GO:0008372] [evidence ND]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000007 Saccharomyces cerevisiae CDS YAL064W hypothetical protein NC_001133 21526-21852 Yal064wp; go_component: cellular component unknown [goid GO:0008372] [evidence ND]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000008 Saccharomyces cerevisiae CDS YAL063C-A Identified by expression profiling and mass spectrometry NC_001133 22397-22687 Yal063c-ap; go_component: cellular component unknown [goid GO:0008372] [evidence ND]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000009 Saccharomyces cerevisiae CDS YAL063C Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation NC_001133 24001-27969 Flo9p; go_component: cell wall (sensu Fungi) [goid GO:0009277] [evidence ISS] [pmid 7502576]; go_function: mannose binding [goid GO:0005537] [evidence ISS] [pmid 7502576]; go_process: flocculation via cell wall protein-carbohydrate interaction [goid GO:0000501] [evidence IEP,ISS] [pmid 7502576] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000010 Saccharomyces cerevisiae CDS YAL062W NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources NC_001133 31568-32941 Gdh3p; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 4126]; go_component: soluble fraction [goid GO:0005625] [evidence IDA] [pmid 11562373]; go_function: glutamate dehydrogenase activity [goid GO:0004352] [evidence IMP,ISS] [pmid 9287019]; go_process: glutamate biosynthesis [goid GO:0006537] [evidence IGI,IMP] [pmid 9287019] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000011 Saccharomyces cerevisiae CDS YAL061W putative polyol dehydrogenase NC_001133 33449-34702 Yal061wp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [goid GO:0016616] [evidence ISS] [pmid 10938079]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000012 Saccharomyces cerevisiae CDS YAL060W NAD-dependent (2R,3R)-2,3-butanediol dehydrogenase, a zinc-containing medium-chain alcohol dehydrogenase, produces 2,3-butanediol from acetoin during fermentation and allows using 2,3-butanediol as a carbon source during aerobic growth NC_001133 35156-36304 Bdh1p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 11914276]; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: (R,R)-butanediol dehydrogenase activity [goid GO:0000721] [evidence IDA] [pmid 11306064]; go_process: glucose catabolism to butanediol [goid GO:0019650] [evidence IDA] [pmid 11306064] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000013 Saccharomyces cerevisiae CDS YAL059W Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export NC_001133 36510-37148 Ecm1p; go_component: nucleolus [goid GO:0005730] [evidence IDA] [pmid 11583615]; go_component: nucleoplasm [goid GO:0005654] [evidence IDA] [pmid 11583615]; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: cell wall organization and biogenesis [goid GO:0007047] [evidence IMP] [pmid 9335584]; go_process: ribosomal large subunit export from nucleus [goid GO:0000055] [evidence IGI] [pmid 11583615]; go_process: ribosomal large subunit export from nucleus [goid GO:0000055] [evidence TAS] [pmid 12486219] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000014 Saccharomyces cerevisiae CDS YAL058W Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast NC_001133 37465-38973 Cne1p; go_component: integral to endoplasmic reticulum membrane [goid GO:0030176] [evidence IDA] [pmid 7814381]; go_function: unfolded protein binding [goid GO:0051082] [evidence IMP] [pmid 15173200]; go_function: unfolded protein binding [goid GO:0051082] [evidence ISS] [pmid 7814381]; go_process: ER-associated protein catabolism [goid GO:0030433] [evidence IMP] [pmid 7814381]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 15173200] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000015 Saccharomyces cerevisiae CDS YAL056W Proposed beta subunit of the heterotrimeric G protein; interacts with the receptor Grp1p, affects signaling by altering the level of phosphorylation of PKS substrates; regulates pseudohyphal growth through cAMP levels; homolog of Gpb1p NC_001133 39260-41902 Gpb2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_component: plasma membrane [goid GO:0005886] [evidence IDA] [pmid 16030250]; go_function: protein kinase inhibitor activity [goid GO:0004860] [evidence IGI] [pmid 16278446]; go_function: signal transducer activity [goid GO:0004871] [evidence IPI] [pmid 12150916]; go_process: negative regulation of phosphorylation [goid GO:0042326] [evidence IGI] [pmid 16278446]; go_process: signal transduction [goid GO:0007165] [evidence IPI] [pmid 12150916]; go_process: telomere maintenance [goid GO:0000723] [evidence IMP] [pmid 15161972] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000016 Saccharomyces cerevisiae CDS YAL055W Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation NC_001133 42178-42720 Pex22p; go_component: peroxisome [goid GO:0005777] [evidence ISS] [pmid 10402463]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: protein targeting to peroxisome [goid GO:0006625] [evidence ISS] [pmid 10402463] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000017 Saccharomyces cerevisiae CDS YAL054C Acetyl-coA synthetase isoform, expressed during growth on nonfermentable carbon sources and under aerobic conditions NC_001133 42882-45023 Acs1p; go_component: cytosol [goid GO:0005829] [evidence IDA] [pmid 9711835]; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14576278]; go_function: acetate-CoA ligase activity [goid GO:0003987] [evidence IDA] [pmid 8910545]; go_process: acetate fermentation [goid GO:0019654] [evidence IMP] [pmid 1363452]; go_process: acetyl-CoA biosynthesis [goid GO:0006085] [evidence IDA] [pmid 8910545] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000018 Saccharomyces cerevisiae CDS YAL053W Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance NC_001133 45900-48251 Flc2p; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 16717099]; go_function: FAD transporter activity [goid GO:0015230] [evidence IMP] [pmid 16717099]; go_process: FAD transport [goid GO:0015883] [evidence IMP] [pmid 16717099]; go_process: cell wall biosynthesis (sensu Fungi) [goid GO:0009272] [evidence IMP] [pmid 16717099]; go_process: protein folding [goid GO:0006457] [evidence IMP] [pmid 16717099] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000019 Saccharomyces cerevisiae CDS YAL051W Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis NC_001133 48565-51708 Oaf1p; go_component: nucleus [goid GO:0005634] [evidence IPI] [pmid 8662598]; go_function: DNA binding [goid GO:0003677] [evidence IDA,IPI,ISS] [pmid 8662598]; go_function: transcriptional activator activity [goid GO:0016563] [evidence IMP,IPI,ISS] [pmid 8662598]; go_process: fatty acid metabolism [goid GO:0006631] [evidence IGI,IMP] [pmid 8662598]; go_process: peroxisome organization and biogenesis [goid GO:0007031] [evidence IGI,IMP] [pmid 9774671]; go_process: positive regulation of transcription [goid GO:0045941] [evidence IGI,IMP,IPI] [pmid 8662598] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.
TI4932S000020 Saccharomyces cerevisiae CDS YAL049C hypothetical protein NC_001133 51856-52596 Yal049cp; go_component: cytoplasm [goid GO:0005737] [evidence IDA] [pmid 14562095]; go_function: molecular function unknown [goid GO:0005554] [evidence ND]; go_process: biological process unknown [goid GO:0000004] [evidence ND] Saccharomyces cerevisiae chromosome I, complete chromosome sequence.

Total number of rows: 5869

Table truncated, full table size 4182 Kbytes.




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Supplementary file Size Download File type/resource
GPL15609_2006-08-18_TI4932_60mer.ndf.gz 21.0 Mb (ftp)(http) NDF
GPL15609_2006-08-18_TI4932_60mer.ngd.gz 882.7 Kb (ftp)(http) NGD

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