GEO help: Mouse over screen elements for information.
Status
Public on Aug 26, 2012
Title
NimbleGen 3x1.4M Maize Methylation Array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Zea mays Manufacturer
NimbleGen
Manufacture protocol
See http://www.nimblegen.com/technology/manufacture.html .
Description
Design name: 110325_Zea_mays_NS_CGH
Submission date
May 27, 2012
Last update date
Jun 05, 2012
Contact name
Steve R Eichten
E-mail(s)
eicht021@umn.edu Organization name
University of Minnesota
Department
Plant Biology
Lab
Springer Lab
Street address
1445 Gortner Ave
City
St. Paul
State/province
MN
ZIP/Postal code
55108
Country
USA
Samples (87)
GSM943691 , GSM943692 , GSM969531 , GSM969532 , GSM969533 , GSM969535
GSM969536 ,
GSM969537 ,
GSM969538 ,
GSM969539 ,
GSM969540 ,
GSM969541 ,
GSM969542 ,
GSM969543 ,
GSM969576 ,
GSM969577 ,
GSM969578 ,
GSM1141785 ,
GSM1141786 ,
GSM1141787 ,
GSM1141788 ,
GSM1141792 ,
GSM1141794 ,
GSM1141795 ,
GSM1141806 ,
GSM1141807 ,
GSM1141808 ,
GSM1141809 ,
GSM1141810 ,
GSM1141811 ,
GSM1141812 ,
GSM1141813 ,
GSM1141814 ,
GSM1141815 ,
GSM1141816 ,
GSM1141822 ,
GSM1141823 ,
GSM1141824 ,
GSM1141825 ,
GSM1141826 ,
GSM1141827 ,
GSM1141828 ,
GSM1141829 ,
GSM1141832 ,
GSM1362180 ,
GSM1362181 ,
GSM1362182 ,
GSM1362183 ,
GSM1362184 ,
GSM1362185 ,
GSM1362186 ,
GSM1362187 ,
GSM1362188 ,
GSM1362189 ,
GSM1362190 ,
GSM1362191 ,
GSM1362192 ,
GSM1362193 ,
GSM1362194 ,
GSM1362195 ,
GSM1362196 ,
GSM1362197 ,
GSM1362198 ,
GSM1362199 ,
GSM1362200 ,
GSM1362201 ,
GSM1362202 ,
GSM1362203 ,
GSM1362204 ,
GSM1591179 ,
GSM1591180 ,
GSM1591181 ,
GSM1591182 ,
GSM1591183 ,
GSM1591184 ,
GSM1591185 ,
GSM1591186 ,
GSM1591187 ,
GSM1591188 ,
GSM1591189 ,
GSM1591190 ,
GSM1591191 ,
GSM1591192 ,
GSM1591193 ,
GSM1591194 ,
GSM1591195 ,
GSM1591196 Series (6)
GSE38503 Variation in DNA methylation patterns more common among maize inbreds than among tissues
GSE39456 Genomic Distribution of Maize Facultative Heterochromatin Marked by Trimethylation of H3K27
GSE39460 Spreading of heterochromatin is limited to specific families of maize retrotransposons
GSE46949 Epigenetic and genetic influences on DNA methylation variation in maize populations
GSE56479 Consistent and Heritable Alterations of DNA Methylation are Induced by Tissue Culture in Maize
GSE65266 Limited evidence for consistent changes in maize DNA methylation patterns following environmental stress.
Data table header descriptions ID PROBE_ID
CHROMOSOME Chromosome
RANGE_START Chromosomal start position of probe
RANGE_END Chromosomal end position of probe
LENGTH Length of probe
SPOT_ID
Data table ID CHROMOSOME RANGE_START RANGE_END LENGTH SPOT_ID CHR1FS000000001
chr1
1
59
59
CHR1FS000000001
CHR1FS000000201
chr1
201
261
61
CHR1FS000000201
CHR1FS000000401
chr1
401
457
57
CHR1FS000000401
CHR1FS000000601
chr1
601
659
59
CHR1FS000000601
CHR1FS000000801
chr1
801
862
62
CHR1FS000000801
CHR1FS000001001
chr1
1001
1057
57
CHR1FS000001001
CHR1FS000001201
chr1
1201
1261
61
CHR1FS000001201
CHR1FS000001401
chr1
1401
1462
62
CHR1FS000001401
CHR1FS000001601
chr1
1601
1656
56
CHR1FS000001601
CHR1FS000001801
chr1
1801
1850
50
CHR1FS000001801
CHR1FS000002001
chr1
2001
2050
50
CHR1FS000002001
CHR1FS000002631
chr1
2631
2680
50
CHR1FS000002631
CHR1FS000002831
chr1
2831
2880
50
CHR1FS000002831
CHR1FS000003031
chr1
3031
3080
50
CHR1FS000003031
CHR1FS000003231
chr1
3231
3289
59
CHR1FS000003231
CHR1FS000003431
chr1
3431
3480
50
CHR1FS000003431
CHR1FS000003962
chr1
3962
4011
50
CHR1FS000003962
CHR1FS000004818
chr1
4818
4881
64
CHR1FS000004818
CHR1FS000005018
chr1
5018
5074
57
CHR1FS000005018
CHR1FS000005218
chr1
5218
5269
52
CHR1FS000005218
1400988 80930 Kbytes .Supplementary file Size Download File type/resource GPL15621_110325_Zea_mays_NS_CGH.ndf.gz
69.0 Mb
(ftp) (http) NDF
GPL15621_110325_Zea_mays_NS_CGH.pos.gz
10.6 Mb
(ftp) (http) POS
GPL15621_110325_Zea_mays_NS_CGH_UX3.ncd.gz
262 b
(ftp) (http) NCD
GPL15621_110325_Zea_mays_NS_CGH_probe_locations.gff.gz
8.9 Mb
(ftp) (http) GFF
Less...
More...