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Platform GPL15651 Query DataSets for GPL15651
Status Public on Jul 01, 2012
Title NimbleGen Human 3x720k Whole Genome CGH [090210_HG18_WG_CGH_v3.1_HX3]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's website for details
 
Description Build: Hg18, NCBI 36
native array description file: 090210_HG18_WG_CGH_v3.1_HX3.ndf
native array description file: 090210_HG18_WG_CGH_v3.1_HX3.pos
 
Submission date Jun 04, 2012
Last update date Jul 01, 2012
Contact name Benjamin Pope
Organization name Florida State University
Department Biological Science
Lab David Gilbert
Street address 319 Stadium Dr
City Tallahassee
State/province FL
ZIP/Postal code 32306-4295
Country USA
 
Samples (10) GSM942307, GSM942308, GSM1548595, GSM1548596, GSM1548597, GSM1548598 
Series (3)
GSE38460 Independence of Repressive Histone Marks and Chromatin Compaction during Senescent Heterochromatic Layer Formation
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
GSE63428 Distinct classes of genes behave as either drivers or dependents of replication timing switches (Replication-Timing).

Data table header descriptions
ID PROBE_ID
CHR Chromosomal location of oligo (Hg18, NCBI 36)
RANGE_GB GenBank Accession number for chromosome
START Chromosomal start position of oligo (Hg18, NCBI 36)
END Chromosomal end position of oligo (Hg18, NCBI 36)
SEQ_ID seq id
SEQUENCE probe sequence

Data table
ID CHR RANGE_GB START END SEQ_ID SEQUENCE
CHR01FS000032108 chr1 NC_000001.9 32108 32167 chr1:1-247249719 ACTTTATTCAAGAGCCTATTGTGCAAGCATAAGTGGCTGAGTCAGGTTCTCAACTCTGCT
CHR01FS000036566 chr1 NC_000001.9 36566 36625 chr1:1-247249719 GCAATCATGTAGACATCCTGATTCCAGACAATGTGTCTGGAGGCAGGGTTTACAGGACTT
CHR01FS000037196 chr1 NC_000001.9 37196 37255 chr1:1-247249719 TGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTC
CHR01FS000038109 chr1 NC_000001.9 38109 38168 chr1:1-247249719 CATTCCCTCTGTATGCCATATTTGATAAAGCATTTGATAATCTTAGTCAATGCCTGGGCC
CHR01FS000039532 chr1 NC_000001.9 39532 39591 chr1:1-247249719 TGAAGTCAGGAGACACACATTCTATCTGATTTTCTACATTATCTGTTTGAAAAGGTTACC
CHR01FS000049283 chr1 NC_000001.9 49283 49342 chr1:1-247249719 TCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTC
CHR01FS000052308 chr1 NC_000001.9 52308 52367 chr1:1-247249719 TAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTC
CHR01FS000055650 chr1 NC_000001.9 55650 55709 chr1:1-247249719 AGTATTATGCTGGCAACAATTGTCGAGTCCTCCTCCTCACTCTTCTGGGCTAATTTGTTC
CHR01FS000059489 chr1 NC_000001.9 59489 59548 chr1:1-247249719 AACTTGCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGC
CHR01FS000060884 chr1 NC_000001.9 60884 60943 chr1:1-247249719 ATGACACATCCCAATCTTAACAGATGCTCATTTGGGATACTGTACTTGTGAGTGGAAGTG
CHR01FS000072260 chr1 NC_000001.9 72260 72319 chr1:1-247249719 TTCGAATACTCAAAAGTGCTTACATACAATGAAAAATTTGGAAATCCATAAGCATGGCCA
CHR01FS000241735 chr1 NC_000001.9 241735 241794 chr1:1-247249719 AAGCTTATGAAACAGTAGATGTGTGTATCTAGTACATAAGAGCTGAATGTCAATATATAT
CHR01FS000357503 chr1 NC_000001.9 357503 357562 chr1:1-247249719 AGCCCAGTTGGCTGGACCAATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTT
CHR01FS000389471 chr1 NC_000001.9 389471 389530 chr1:1-247249719 AGTCAGCTGAATAGAGATGTTTTGCTTAGTCTATGTAAAAGTATATTAATTTTATTGATA
CHR01FS000403676 chr1 NC_000001.9 403676 403735 chr1:1-247249719 GCAAGGACATGCAATGTGACTTCACTACTCCTTTCATCAAGAAAAGGAGCCTCTTGGTCG
CHR01FS000443361 chr1 NC_000001.9 443361 443420 chr1:1-247249719 ACACGTATATCGCTACGGTTACTAATTGTGTGCACCTAGCCCTGTAGCTGTGGTCATCTG
CHR01FS000530358 chr1 NC_000001.9 530358 530417 chr1:1-247249719 GCAAATTACAGCCACTAGGAAACGCTTTTCATTCATTCCGGGATGGCTGAAATGTAAGCA
CHR01FS000532718 chr1 NC_000001.9 532718 532777 chr1:1-247249719 TTCCTCCTCTTGAGTCTCATCTCGGAAAGAGGGAGCTGTCAGTCAGAGCTCAGGCCAAAC
CHR01FS000547649 chr1 NC_000001.9 547649 547708 chr1:1-247249719 CACTTCAGAGCTATGGGAACCAATGGAATTGGATCTAAGGTTTTGAGTTGGCTCTTGTGC
CHR01FS000553694 chr1 NC_000001.9 553694 553753 chr1:1-247249719 TGTGCCTACGGACATAATCTTTGAATTTGCTTTGTTTCTCGATGAATAACTTGGAAGCTA

Total number of rows: 719690

Table truncated, full table size 92427 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL15651_090210_HG18_WG_CGH_v3.1_HX3.ndf.gz 41.3 Mb (ftp)(http) NDF
GPL15651_090210_HG18_WG_CGH_v3.1_HX3.pos.gz 5.4 Mb (ftp)(http) POS

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